Etheostoma spectabile (orangethroat darter): 116669770
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Entry
116669770 CDS
T08457
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
esp03036
]
116669770 (dicer1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116669770 (dicer1)
microRNA pathway
RISC loading complex
116669770 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
dsrm
Motif
Other DBs
NCBI-GeneID:
116669770
NCBI-ProteinID:
XP_032355697
LinkDB
All DBs
Position
20:20059628..20098070
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AA seq
1920 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQEHAKRTVFLVNTVVSVVQQAAAVRTHSDLQVGEYTDLEET
SAWTDQRWSREITENQVLVMTCHIFLHVLRTKILPLSKINLVVFDDCHLAITDHPYCEIM
KLFEGCSCSPRILGLTASILNGKCDPSELEHKIQNLESILKSNAETATDLVVLDRYASQP
REVVLDCGPYVDKSGLSSSLQVELDEALHFLNDCNVSFAREDRDPTFISKQVLSDCRAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEDLNRKFLLFTDTILRKVHALCEEHFSPAALDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQAR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKTFEEDLTTYKAIEKILRNKCSKSVEVSEFEVEQVLDDDNV
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTAERQDNRFQSTLYLP
INSPLRVPIKGPTMNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPKQTYYLYVVGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTTAQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSSTLDMDFGFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISSPDSCSEDGEGDCEHDCEHQETLTPDSDSPTHPSSHHSPLS
ERGPLAALKPGEVEHKGNLPNGTALISDCDDDGHQDEHLHQRDNCQRSQPSTPGLSSPES
IQITTSTPVQPSHSSKKPSSSPPQPSDECTPGRPSDHANKATSICSRAATAPNAPTAPSP
PDLDAVPQHRAQTGDSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTY
LFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQD
KSSTDNLDLEEAKEELLANGQSGNDSDEDEEEEEEGEGEEVEEGDEDSELMLKEEPKDEV
NMEDDLEYYKEHIKFIDNMLLGSGAFGKKISLSGFPPSLTPAAASTPAMESPYEWKAPKK
PPHPTAAHYPAEPAPSGPSAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGAE
LGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGTL
TGAVVQSCQVTTIDLCYGWLKIPPRCLLDHPDAERTLNHLISGFENFEKKINYTFQNKAY
LLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN
TIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDI
EVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEP
ETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctacagcttgtcacccctgccacttcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgataacatctacacacctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactatcgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggacattaccaa
gaacatgcgaagaggactgtttttctggtgaacacagttgtgtccgtagttcagcaagca
gctgcagtcaggactcactcggacctccaagtgggagagtacacagatctggaggagacc
tcagcatggacagaccagcggtggagtcgagagataaccgagaatcaggtgctggtcatg
acttgccacatattcctgcacgttctgaggacgaaaatcttaccgttgtctaaaatcaac
ttggtggtttttgacgattgtcacctggccatcacagaccacccttactgtgaaataatg
aagctgtttgagggctgctcatgcagtcctcgtatcctgggtctcacagcctccattctg
aatgggaagtgtgacccgtcagaactggagcacaagatccagaatctggagagcatcctg
aagagcaatgctgaaactgccacagaccttgtggtcctggacagatacgcctctcagcca
agagaagtggtgctggactgcggcccctacgtggacaagagtggcctctcttcctctctg
caggtagagctggatgaagctctccacttcctgaatgactgcaacgtctcttttgccaga
gaggaccgtgatcccacgttcatctccaaacaggtcttgagtgactgccgggccgtgctg
caggtcctgggaccctggtgtgcggacaaggccgcaggcattatggtgcgggagctgcag
aagtacatcaaacacgagcaagaggacctcaaccgcaagtttctgctcttcaccgacacc
atcctgcgcaaagtgcacgccctgtgcgaggagcacttctcgcccgccgcgctggacctc
aagttcgtcacccccaaggtcctgcgtctgctggagatcctgcacgagtacaagcccttc
gagcgccagcagtttgaaagcgtggagtggtacaacaaccgcaaccaggacaactacgtg
tcctggagcgactccgaggatgaggacgaggacgaggaggtggaggccaaagagaggcct
gaagctaactttccctcaccgttcaccaacatcctgtgcgggatcatctttgtggagagg
cgttacactgccgtcgtcctcaatcgtctgatcaaagaggcggggaagcaggacccagag
ctggcttacatcagcagcaacttcatcaccggccacagcatcggcaagaaccaggcgcgc
aacaagcagatggaggtggagttcaggaaacaagaagaggttctccgcaaattccgggcc
catgaaaccaacctgctgatcgccaccagcatcgtggaggaaggggtggatatcccaaag
tgtaacctggtggtgcggtttgacctccccacggagtacaggtcctacgtccagtccaaa
ggcagggcgcgagctcccgtctccaactacatcatgctcgcggacagtgagaggaccaaa
acctttgaagaagatctcactacctacaaggccattgagaagatcttaaggaacaagtgc
tccaagtcggtggaggtgagtgagtttgaagtggagcaggtcctggacgatgataacgtc
ctcccaccctacgtgcttcgatctgaggatggaggtccccgggtcaccatcaacacagcc
attggtcacattaacaggtattgtgcccggctgcccagtgacccgttcacacacttagca
cccaagtgtaaaactgcagagaggcaggataaccgcttccagtcaacgctctatttgccc
atcaactcccctctgcgagttcctattaagggtcctacaatgaactgcgccagactggca
gagaaagcagttgcactagtatgctgtgagaaactccataagataggtgagctggatgat
cacctgatgccggtgggaaaggagacggtgaagtatgaggaggagctggaccttcatgat
gaggaggagaccagcgtgccaggccggcccggctctaccaaacggaggcagtgctaccct
aaagccataccagagtgtctgcgggacagttacgctgtaccgaagcagacatactaccta
tatgtggtcgggatggtcctcaccacccctctcccggatgaactcaacttccgcagaagg
aagctctacccaccggaggacaccaccaggtgcttcggcatcctgactgccaaacccata
cctcgaatcccccatttcccggtgtacactcgctcgggtgaggtgaccatctccatcgag
ctgcagaagtcgggcttcaccctcaccaccgcccagctggacctcatcacccgcctgcac
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaagcccacg
ctggcggactcggcttactgcgttctacctctgaatgttgttggggactccagcacgcta
gatatggactttgggttcatggaggacattgagaagtctgaggcccgcactggcattcct
accactcagtacaccaagcagaaccccttcaccttcaagctggaggactaccaggacgct
gtcatcattccaaggtatcgcaactttgaccagcctcatcgtttctacgttgctgatgtg
tacacagacctgaccccgcttagtaagtttccttcaccagagtacgagacattcgctgag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccagccgcttctggacgta
gaccacacctcctccagactaaacttgttaaccccgcggcacctgaaccagaagggcaaa
gccctgccactcagcagtgcagagaagaggaaggccaagtgggagagtctgcagaacaag
cagatcctggtcccagagctgtgtgccatccaccccatccctgcctccctgtggaggaaa
gcagtgtgtctgcccagcatcctctaccgcctccactgccttctgacggccgaggagctc
agagcccagacagccactgaagctggagtgggagcccagacccttccccctgacttcagg
tatccaaacctggactttggctggaaaaggtccatcgacagcaaaacgttcatctcctct
cccgactcctgcagtgaggatggcgagggcgactgcgagcacgactgcgagcaccaagag
actctcacccctgactccgattccccaacacatcccagtagtcaccactctcccctgtcc
gagcgggggcccctcgcggccctcaaaccaggagaagtcgaacacaaggggaacctaccc
aacggcactgccctcatcagcgactgtgatgacgacggccaccaagacgagcaccttcac
caacgtgacaattgccaacgctcgcagcccagcacccctgggctgtcgagtcccgaatca
atacaaatcactacctcaactcccgtgcagccctctcacagctcgaagaagcccagctcc
agtcctccacagccaagcgatgaatgtacaccagggaggccctcagaccatgcaaataaa
gctacctcaatctgcagccgggcagccacggctcccaatgctcccacagcaccttctcct
cccgatctggacgctgtcccccagcacagagcccagaccggagactcccccaaaagcctg
gggcccaatccgggcctcatcctgcaggccttgaccctatccaacgccagcgacggtttc
aacctagagcggctggagatgctcggagattctttcctcaagcacgccattaccacgtac
ctgttctgtacctaccccgacgctcacgagggacgacttagctacatgcgcagcaagaag
gtgagcaactgtaacctgtaccggctggggaagaagaaggggctccccagcaggatggtg
gtgtccatctttgacccccctgttaactggctgccccccggctacgtggtcaaccaggac
aagagcagcacagacaatctggatttagaggaggccaaagaggagcttctggccaacggg
cagtctggaaacgactctgatgaggacgaggaggaggaggaggagggggagggggaggag
gtggaggagggggatgaggacagtgagctaatgctgaaggaagagccaaaggatgaagtc
aacatggaggatgatctggagtactacaaggagcacatcaagttcattgacaacatgctg
ttgggatccggtgcgtttggcaagaagatctccctgagcggcttccctccctctctcacc
ccggccgcggcttctacccccgcaatggagtctccatatgagtggaaggcccccaaaaag
cccccccatcccaccgccgcccactaccctgcggagccggcacctagcgggccctccgcc
gaggagtttgactacagctcgtgggacgccatgtgctacctggatcccagtaaggccggg
gaggaggacgactttgtggtgggcttttggaatccatctgaggaaaattgcggcgcagag
ctcggcaagcagtcgatctcctacgacctgcacacggagcagtgcatcgccgacaagagc
attgccgactgcgtggaggccctgctgggctgctacttgaccagctgtggagagagagcg
gcccagatgtttctctgctcgctgggcctcaaggtgttaccgctggagagagggaccctg
acaggagcagtggtgcagagctgtcaggtcaccaccatcgacctgtgctacggctggctg
aagatcccaccccgctgcctgctggaccatccggacgcagagcggactctcaaccacctc
atctctggcttcgagaactttgaaaaaaagatcaactacacgtttcagaacaaggcttac
cttctgcaagccttcacccacgcttcctaccattacaacaccatcacagattgttaccag
cggctggagttcctcggcgatgcaattctagactacctcataacaaagcacctttatgaa
gacccgcggcagcactctcccggtgtgctgaccgacctgcgctcggcactcgtcaacaac
accatctttgcctctctggccgtcaagtacgactaccacaaatacttcaaggccatctcg
cccgagcttttccacgtcatcgacgactttgtgcagtttcagctggagaagaacgagatg
caaggcatggactccgaactgcggcgctctgaagaagatgaggagaaggaggaggacatc
gaggtccctaaggccatgggggacatctttgagtcgctagccggagcaatttacatggac
agcaggatgtccctggagacggtgtggcaagtgtattatccaatgatgaggccacttata
gagaaattctctgccaatgtgccacgctctcctgtgagggagctgctggagatggaacca
gaaactgccaagttcagccctgcagagcggacgtacgacgggaaggtccgggtgacggtg
gaggtcgtcggtaagggcaagtttaaaggagtgggccgcagctaccggatcgccaagtcg
gcggcggcgcggcgagctctgcgcagcctcaaagccaatcaacctcaggtccaaaacaac
tga
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