Etheostoma spectabile (orangethroat darter): 116694236
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Entry
116694236 CDS
T08457
Symbol
cnot4
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116694236 (cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116694236 (cnot4)
03019 Messenger RNA biogenesis [BR:
esp03019
]
116694236 (cnot4)
04121 Ubiquitin system [BR:
esp04121
]
116694236 (cnot4)
Enzymes [BR:
esp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116694236 (cnot4)
Transcription factors [BR:
esp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116694236 (cnot4)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116694236 (cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116694236 (cnot4)
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116694236 (cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
DZR_2
RDD1
Torus
zf-CCCH_2
Rtf2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
116694236
NCBI-ProteinID:
XP_032379728
LinkDB
All DBs
Position
8:4128868..4140569
Genome browser
AA seq
800 aa
AA seq
DB search
MSNSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPTCGTEKLKSKSNSTQRTNGSNGKDGWPTLSGHNKLANGLSEDRKS
PPLLDYLDQEVLTSDGLETDLGPGQRTVLSPFSSNCDSNSPSDKPPDSIGMVNGETLQQI
PTSDSPSPPPGLSKPSLVVPISMSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLP
PFPSSPRSNSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQSPLSPGLLSHGGSNHGPGLPPLNPNPSSSHHFPSGLPRLPQLH
HRAIYSSFSFPGSQNSQANQQQPSARHPWMGVPTRNNLTHLNHSASAASHSNFLDLNLPP
QHNTGLGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSVN
HIGGPVGPAGLSHSLSWDGTASWMDPAIITGIPAPAGNSLDCLQDDNPPHWLKSLQALTE
MEXPGHSAVPTPPQPXHSGLLDAHLPLHHRAAGGWAPYMPPPTANPASQFHSPPPGFQTA
FRPPGQPATELLQSAAVDRH
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacagccctgaaatgaaggacgaccccatggaatgccctctgtgcatggagccg
ctggagattgatgacgtcaacttcttcccctgcacttgtggctatcagatctgccgcttc
tgttggcatcgcatccgcacagacgagaacggcctgtgccccgcctgcagaaagccgtac
ccagaggaccctgctgtgtacaagcctctgtcacaggaggagatccaaaggataaagaac
gaaaagaagcagaaacagaatgagaagaagcagaaggtgacagaaaaccgaaagcatctg
gccagtgtcagagtggtccagagaaacctggtgtttgtggtggggctctcgcagcgactc
gccgatccagaggtcctaaaacgacccgaatattttgggaggtttgggaaaatccataaa
gtggtcatcaacaatagcacatcctacgcaggttcacaggggcccagtgccagcgcttat
gttacttacatccgctctgaagatgctttaagagcaatacagtgtgtgaacaatgtggtt
gttgatggaagaactctcaaggcttctttaggcacaacaaagtactgcagttacttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacatgagctgggggatgaagca
gctagctttactaaagaggagatgcaggcgggcaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaattaaccctagctttctacaacctccaacatgtggaacagag
aagttaaagagtaaatccaactccacacaaagaaccaacggtagcaatggtaaagatggg
tggccgacgctgtcaggacacaacaaactggccaacgggctttcagaggaccgcaagtct
cctccgctgctagactatctagaccaagaagttcttacttcagatgggctagaaacagac
ctgggtcctggtcagcgtactgtgctgtctcctttctcctctaactgtgacagtaacagt
cccagtgataaacctccagattcaattggtatggtgaatggagagactttacaacagatc
cccaccagtgactccccatctccccccccgggtttaagcaagcccagcttggtggtgcct
atcagcatgtcagacctcacagcccgttcacccttcgagggagcggcggctgagtcccag
tcgctcttttcagacaacagtaacttcagacatcctaaccctctccctgctggcctgccc
cccttccccagctccccccgcagcaattctgactggcccatgacccctgaaccacagagc
ctcttcacatcagacacaataccagtgtcttcttccacagactggcaggcggcctttggc
ttcgggtcgtccagcaagcagcaagacgacgatctgggcttcgatccttttgacgtcact
cgcaaggccttggccgacctgatagagaaggagctgtccgtgcaggatcagagccccttg
tccccggggctcctctcccatggtgggagcaaccatggtcccggcctgcctcctctcaac
cctaaccccagctcctctcaccacttccccagcggcctgccacgcctcccccagctccac
cacagagcgatctacagctctttcagttttcccggcagtcagaacagccaggccaatcag
cagcagccatccgccagacacccctggatgggcgtcccgacacgaaataacctcacacac
ttgaaccactcagccagtgctgcctcacacagtaatttcctggacctgaatctgccccct
cagcacaatacagggctgggagggatccccatctcagaaaacagcggctctatagacggc
ttaaatgtgaaagagtggcaggatggcctgagagctctcctgcccaacatcaatatcaac
tttgggggcctcccaaactcttcttcctcttcatcctcctcatcctccaacagtgttaat
cacatcggtgggcccgtggggccagcaggcctctcacacagcctgagctgggacggcaca
gccagttggatggaccctgctatcatcacaggcatcccagccccagcaggcaacagttta
gactgtctccaggatgacaacccaccacactggctcaagtccctgcaggcgctcacagag
atggagnngcccggccactcggcggtgcccactcctccccagcccntccacagcggcctt
ctcgacgcccacctccccctccaccacagagccgccggcggctgggctccttacatgccc
cctcccacagccaaccccgccagccagttccactcccctcctccaggcttccagacagcc
ttcagacccccaggacagcccgccacagagctgctacagagtgccgctgtggaccgccac
tga
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