Etheostoma spectabile (orangethroat darter): 116698293
Help
Entry
116698293 CDS
T08457
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
esp
Etheostoma spectabile (orangethroat darter)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_9
NKWYS
Motif
Other DBs
NCBI-GeneID:
116698293
NCBI-ProteinID:
XP_032386025
LinkDB
All DBs
Position
2:complement(20624432..20638497)
Genome browser
AA seq
582 aa
AA seq
DB search
MSSTLGKEKDPKEKDPKGGPAGKEREKEAKALAGLVKDGGKETKTKGKDAKEGKKDTSSS
TPGVAFSVDNTIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHMLPTSIK
ELTQLAELYLYSNKLQSLPAEVGCLSGLVTLALSENSLTSLPDSLDSLKKLRMLDLRHNK
LREIPAVVYRLTSLTTLYLRFNRITTVEKDIRNLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPREIGNCTQITNLDLQHNELLDLPETIGNLASINRLGLRYNRLSAIP
RSLATCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VCGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTN
NQLTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtactttaggcaaagaaaaagacccgaaagaaaaggaccccaaaggtggtcca
gcggggaaagaaagggaaaaggaggccaaggctctagccggcttagtaaaggatggtggc
aaagaaacgaagaccaaagggaaagatgccaaagaaggaaagaaggacaccagcagctca
acaccgggtgttgccttctctgttgacaatacgataaagcggccaaacccggcaccaggt
acacgcaagaagtccagcaatgccgaggtgatcaaagagctcaacaagtgtcgggaggag
aactcaatgagactggacctttctaaaaggtccattcacatgctgcccacctccataaag
gagttgacgcagctggctgaactctacttgtacagcaacaagctgcagagcctgccggcg
gaggtgggttgcctatcaggtctggtcactttggccctgagtgaaaactccctgaccagt
ttgcctgactccctggactctcttaagaagcttcgaatgctcgacctccggcacaacaag
ctgagagagataccggctgttgtctaccggctgacatctctgaccacgctgtacctgcgc
ttcaaccgcattacaactgtggagaaggacatccgaaacctatccaagctcactatgctc
agcattcgtgagaacaaaatcaaacagctgcccgcagagataggggagctatgcaacctc
ataactctggatgttgcccataaccagttggaacacctaccgagagagattgggaattgc
acacagattaccaacctcgacttgcagcacaatgagctcttggacctcccagagactata
ggcaacctggcaagcataaatcgtttaggtctgcgatacaatagattgtcagccattccc
agatcattagccacatgtcgagaactggaggagctaaatcttgaaaataacaacatttca
gtgttgccagagggcctactgtcaagtttggttaacctgaccagtctaacactggcgagg
aactgcttccagtcgtaccctgtgggtggaccatcccagttctccaccatctactccctc
aacatggagcacaaccgcatcaacaagatcccctttggtatcttctccagagccaaagtg
ttaagcaagcttaacatgaaggacaaccagttaacatctctgccattggactttggcaca
tggactagcatggtcgagcttaacctggccaccaatcagctgacaaagatcccagaggat
gtctgtggtttagtctctctggaggtgttaatattgtccaataatcttctcaagaagtta
ccgcatggtattgggaatttgagaaagctacgggaacttgacttagaggaaaacaagttg
gaatctctacccaatgaaattgcgtatcttaaagatttacagaaattggtgttgacaaat
aatcagctgaccacgttacccagaggcatcggccacctcaccaacctgactcatcttggt
ttgggggagaacctgctgcaacaccttccagaggagattggtacactggagaacttggag
gaactgtacctcaatgacaaccccaacctgcacagcctcccgttcgagctggccctgtgc
agcaagctgtccatcatgagcatcgagaactgtcccctcagccacctgccgccccagatt
gtcgcgggaggcccctccttcatcatccagttcctcaagatgcagggaccgtaccgtgcc
atggtctga
DBGET
integrated database retrieval system
