Etheostoma spectabile (orangethroat darter): 116698608
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Entry
116698608 CDS
T08457
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116698608 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
116698608 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116698608 (thoc1)
03041 Spliceosome [BR:
esp03041
]
116698608 (thoc1)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116698608 (thoc1)
Spliceosome [BR:
esp03041
]
Complex C
Other components
EJC/TREX
116698608 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116698608 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
116698608
NCBI-ProteinID:
XP_032386501
LinkDB
All DBs
Position
12:10743796..10751100
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AA seq
654 aa
AA seq
DB search
MSPPLFNFVDAKDKFTASARHALVGKTSKPLIHAFNQFPGNEAEKKTTLDQALRCVLGDQ
IVEQKASCDEYLSLIYLSISAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENITVFNKNEQESTLGQKHTEEKEDGMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFSWMTFLKFSDETLAVFKSYKLDDMQASKRKLEEMRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNCVLNDDQTTWIEETTKLV
YQLLREIPPDGDQFATMVEHILNTEESWNSWKNEGCSSFVKERPVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEDDDDDNGDNLLKDSNDSPSIQNKMVTNQQMDDIAAKLGAQWKMLASHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGSQATVESLVTALNAAGFSQIADNLNEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgcccttattcaattttgtcgacgctaaagacaaatttacggcgtctgccaga
catgccctagttggtaaaaccagcaaacctttgatacatgctttcaaccagttccctgga
aatgaggcagaaaagaagaccacacttgaccaggcgctgaggtgtgttctcggtgatcag
attgttgagcagaaggcgagctgcgatgaatacttgtctctcatctacctgagtatttct
gcagttacagaaggtatctgttctgctacaactcctttccttctgcttggagatgtactg
gactgtcttcctcttgaccaatgtgacaaaatattctcttttgtcgaggagaatgtctcc
acttggaaatcgaactctttttacactgctgggaagaactacttgttgaggatgtgtaat
gatcttttaagaagactgtccaaatcccagaatactgtattctgtgggcgaatccagctt
ttcctggcacgtctcttccctctgtctgaaaaatcaggtctcaatctgcagagccaattt
aatctggagaatataacagtgttcaacaaaaatgaacaagaaagcactctgggccagaag
cacacagaagaaaaggaagatggtatggaggtggaagaaggagaaatgggagaggatgac
gctcctgcaccgtgttccattccgattgactacaacttgtacagaaagttctggacactg
caggactacttcaggaaccctgtgcagtgttacgataaattcagttggatgacattccta
aagttctcagatgagactttggcagtgttcaagagctataaactggatgacatgcaggcc
tctaagagaaagctggaagagatgagagcatctggaggagagcacgtctactttgccaag
tttctaacaagtgagaagctcatggacttgcagctcagcgacagcaacttccggcggcac
attttactgcagtacctcatcctcttccagtacctgaagggtcaggtcaagttcaaaagc
tccaactgtgttctgaacgatgaccagactacatggattgaagagacgactaaactggtt
tatcagctgctgagagagatccctcctgatggagaccagtttgccaccatggttgagcat
attctcaacacagaggagagctggaatagctggaaaaatgagggctgctcgagctttgtg
aaagaaaggccagtagatgacaaacccaaaagacccaccaggaaaagacaagccccagaa
gacttccttggaaaagggccggaccgcaagatattcatgggaaatgatgagttgactcga
ctgtggaacctgaaccaggacaacatggaggcctgcaagtcagacagcagggagtttatg
ccatcgctggatgaattctttgcggaagccattgaacaggccgaccctgctaacatggtg
gaggaggagtacaaggttgtgcggaacccaaactacggctggcgtgctctaaggctgctg
tccaggagaagtccacacttctttcaaccaactaaccagaagttcaagagcctggcagac
tacctagacagcatggtcagcaaactggccaaagaattgccgaaggatattccctccgaa
gagatcaagacaggagaagacgatgacgacgataatggagacaatcttctcaaagacagc
aatgacagtccgagcatacagaacaagatggtgactaaccagcagatggatgacatagca
gccaaactgggcgcgcagtggaagatgctggcatctcatttggagatgaaggcagcagag
ttgcgagagattgaaacagatagtgaagatgtcgacatgcaggccaaactgctgcttgta
gcctggcaggatagagagggatcacaagccactgtggaaagcctggtcacagctcttaat
gctgcaggattttcccagattgcagacaacctcaatgaggcttaa
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