Etheostoma spectabile (orangethroat darter): 116698918
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Entry
116698918 CDS
T08457
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116698918
03015 mRNA surveillance pathway
116698918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116698918
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116698918
5.6.2.5 RNA 5'-3' helicase
116698918
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116698918
mRNA cycle factors
Common to processing body (P body) and stress granule
116698918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116698918
NCBI-ProteinID:
XP_032387046
LinkDB
All DBs
Position
12:complement(25776791..25794930)
Genome browser
AA seq
1115 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQTQSQLDNQV
NGPDSMLQNGDDSVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGH
VIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSSLKTFAVDETSVSG
YIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICSTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSSMYFQTHDQIGMIGTGSSPMTSL
NIPIPFNLVIPPIPPPGYMGPVNGPSPGRGGGMKGKAGSGGGSGTRGGRQRNRGNMGNHS
SGHGGADRHGGHMSGSQASQDLGSQPFSQGPLTQGYMNMSQPSQMSQPGLSQPELSQDSY
LGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgactttaccctg
ccgagccagacccagacccaaggccaaacccaaacccagagtcagctagataaccaggtt
aatggccctgatagcatgctacagaatggagatgactctgtggtaaaagccagtcagctg
ctggcagagttgaactttgaggaggatgaggaggacacctactacaccaaggatctccct
gtacatgcatgcagttactgtggcattcatgatccagcctgtgtggtctactgcaacacc
agcaagaagtggttttgtaatggccgtggaaacacatccggcagccacattgtaaaccac
ctggtgagagcaaagtccaaggaggtgaccctgcataaagatggccctctgggggaaacg
gtactggagtgctacaactgtggctgtcgcaatgtcttccttctgggcttcatccctgcc
aaagctgactcagtggtggtgttactatgcaggcagccatgtgccagccagagcagtctg
aaggacatcaactgggacagctcccagtggcagcctctcatccaggaccgctgctttctg
tcctggctggtgaaaatcccttcagagcaggagcagctcagggctcgtcagatcaccgcc
cagcagatcaacaagctggaggaactctggaaggaaaatcccactgcgacccttgaggac
ctggagaagcctggtgtggatgaggagccccagcatgtgctgctccgctatgaggatgcc
taccagtaccagaacatctttggtcctctcgtcaagctggaggctgactacgataagaaa
ctcaaagagtctcagactcaagacaacattactgtcagatgggacttgggcctgaataaa
aagaggattgcttatttcactcttcccaagacagactctgatatgcgactgatgcaggga
gatgaaatttgcctgagatacaaaggagacctggcccctccatggaaaggcattggacat
gtcatcaaagtccctgataactatggagatgagattgccatagagctaaggagcagtgct
ggagctccagtggagatcccccacaactttcaggtcgactttgtgtggaagtccacttcc
tttgacaggatgcagagttccctgaagacatttgccgtggatgagacttcagtgtcgggt
tacatctaccacaaactgctgggacatgaagtagaggatgtggtcatcaagtgccagctg
ccaaaacgcttcaccgctcaaggcctgcctgatcttaaccactcacaggtgtatgctgtg
aagacagtgctgcagcgtcctctcagtctgatccagggtcctcctggcacagggaagact
gtaacctctgccaccattgtctaccacctggccagacaaggcaacggaccggtgctggtg
tgtgctcccagtaacattgccgttgaccagctgacagagaagatccaccagacaggcctc
aaggtggtgaggctgtgtgccaagagcagagaggctatcgactcgcctgtgtccttcctg
gctctgcacaaccagacgcgtaacatggacagtatgccagaacttcagaagctccaacag
ctgaaggacgagaccggagagctgtcctcctcagacgagaagcgctacagagctctgaga
cgcaccgctgagagggagctgcttatgaatgccgatgtgatctgctctacttgtgttggg
gcgggggatccccgtctggccaagatgcagttccgctcaatcctgattgatgagagcacc
caggccaccgaaccagagtgcatggtgcctgtcgtcctgggggccaaacagttgattctg
gtgggtgaccactgccagctaggccctgtggtgatgtgtaagaaggcagctaaagcaggt
ttgtcacagtctctatttgagcgtcttgtcgtcttggggatccggccgattcgcctgcag
gttcagtatcgaatgcacccggccctcagtgccttcccctccaacatcttctatgagggc
tctctgcagaatggagtcactgccgcggaccgtgtgaagaaaggctttgacttccagtgg
ccacagcccgacaagcccatgttcttttatgtcacccaaggccaagaggaaattgctagc
tctggaacttcctatctcaacaggactgaggcagccaatgtagagaaaataaccacaaga
ttgctgaaggctggagcgaaacccgatcagattggaatcattacgccctacgagggacag
aggtcctacttggtccaatacatgcagttcagtggctcccttcataccaaactctaccag
gaggttgaaatagccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctg
tcctgtgtgagggccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctc
aatgtggcactcactagggccagatatggtgtgattattgtgggaaaccccaaggccctg
tccaagcagcctctgtggaaccacctgttgaattactacaaggagcaaaaggtcctggtt
gaaggccctcttaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctt
gtcaacaccatcaacccgggtggtcgattcatgagcacagccatgtatgatgcaagggag
gccctcattcctggatctgtttatgaccgcagcagcaacggacgttcgtccagtatgtat
ttccagacccatgaccagattggtatgattggaacaggctccagcccgatgacttcccta
aacatccccatccccttcaaccttgtgataccccccatacctcctcctgggtacatgggt
ccggtcaatggaccctcaccaggccgtggtgggggtatgaaaggcaaggcaggcagtgga
ggaggcagcgggacgcgaggagggcgtcaaagaaaccgcggcaacatggggaaccacagc
agcggacatggaggagcagaccgacatggaggccacatgagtggcagccaggccagccag
gacctgggctcccagcccttctcccaggggcctctgacgcagggctacatgaacatgagc
cagccgtctcaaatgagccagccagggctctcccagcctgaactctctcaggacagttac
ctaggagatgagttcaagtcccagattgatgtggctttgtcccaggactccacctaccag
ggggaacgggcctaccaacacggtgtgactggactgtcccagtactag
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