Etheostoma spectabile (orangethroat darter): 116699712
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Entry
116699712 CDS
T08457
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03030
DNA replication
esp03410
Base excision repair
esp03420
Nucleotide excision repair
esp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116699712 (lig1)
03410 Base excision repair
116699712 (lig1)
03420 Nucleotide excision repair
116699712 (lig1)
03430 Mismatch repair
116699712 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esp03032
]
116699712 (lig1)
03400 DNA repair and recombination proteins [BR:
esp03400
]
116699712 (lig1)
Enzymes [BR:
esp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116699712 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
116699712 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
116699712 (lig1)
DNA replication proteins [BR:
esp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
116699712 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
116699712 (lig1)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
116699712 (lig1)
NER (nucleotide excision repair)
Other NER factors
116699712 (lig1)
MMR (mismatch excision repair)
Other MMR factors
116699712 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
116699712
NCBI-ProteinID:
XP_032388315
LinkDB
All DBs
Position
12:complement(28675230..28748319)
Genome browser
AA seq
1016 aa
AA seq
DB search
MQRSIASFFQPKSKDSKDVQKKSTDKPVKKPVKSPLKVQNGVQKADSPVTKKVAKHSRQI
LDSDDDDAPVVKEQVATKGHGDKEALSETEKKDAVFMAVPTPLSPSPAPATPVTPATPAT
PASSASPGTPATPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKEEAEAKEEQDQQN
KRARMENSASSTGITDEPMEEDAKEERVEKEVSVANNPDEEEVEKNSEEEEKAKEEERVK
PTSFDEKEKKAEGAENEEKAKEKTEDDKGPAVAKKKKEAVQKDTREGERSPKSQTARQQK
EAKEQKDKEPPKKAPISSFFAPRKAAVKTEKAEESEGEKKTSAERKPSAEDSKDTKSEST
SGQTDYDPSRPKYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVL
LLSPDALLCWCTLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLG
LVAESSRSNQRMMFQPASLTVGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEAR
YIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSTESRRAWIEEKS
LILKQTYCEMPNYDVIIPVLLNEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDE
AAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDS
EAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLSRRRA
LLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSH
NWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGF
KDEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMG
MVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaggacagtaaggacgttcag
aagaagtccacagataaaccagtaaaaaaacctgtgaaaagccctctcaaggtgcagaac
ggtgttcagaaggctgattcccccgtcaccaagaaggttgccaaacacagccgtcagatc
ctggacagcgacgatgacgacgctccggttgttaaagagcaagtcgccaccaagggacac
ggagacaaagaagctcttagtgaaacagaaaagaaggatgctgtctttatggcagttccc
acccccctgtctccgtcacctgccccggccacccctgtaactcctgcaactccagccacc
ccggcctcgtcggcttcacctgggacacccgccaccccaaactccatctccccctctggc
attgttaaacgcaagactgcgaggaagatgttccccaagaggaaactggatgagagcagg
agcggcagcgagagtcagaaagaggaagcagaggccaaggaggagcaggatcagcaaaac
aaacgcgcacgcatggagaacagcgccagcagcacaggtatcacagacgagcccatggag
gaggacgcaaaggaagagagagttgaaaaggaagtgtccgtggctaacaacccagatgaa
gaggaggtggagaagaatagtgaggaagaagagaaggccaaggaggaggagcgggtgaag
ccaacgagctttgatgagaaggaaaaaaaagctgagggggcagaaaatgaagagaaagca
aaggagaagaccgaggatgacaaggggcctgccgttgccaagaagaagaaggaggcggtt
caaaaggacacgcgagagggagaaaggagcccaaaaagtcaaacggcgagacagcagaaa
gaagcaaaagagcagaaagataaggagccacctaagaaagcacccatcagcagtttcttt
gctccaagaaaagctgcagtgaagacggagaaagcagaggagagtgaaggggaaaaaaag
acaagtgcagagaggaaaccctcagcagaggacagtaaagacacaaaaagtgagtcgacc
tccggacaaaccgactacgatccgtccaggcccaaataccatcctgtggaccatgcctgc
tggaagcagggccaaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaa
gaggactctggcaggctgagaaacattgagacgctgtcgaacctgcttcgctccgtgctc
ctgctctctccagatgccctgttgtgctggtgtaccttgtgtttgaaccagctgggtcct
gcctacttggggatggagcttggtgttggagagacggtgctaatgaaagctgttgctcaa
gcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaagggagatttgggc
cttgtggccgagagttcccgtagcaaccagcgtatgatgtttcagccggccagtctgaca
gtagggggcgtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggccatg
aataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgaggcccgc
tacatagtcaggtcccttgctgggaagttaaggataggcctggctgagcagagtgtccta
tctgcactgagccaggctgtttgcctgaccccccctggacaaggtttccctcccgctgtg
atcgacgcagggaagggtatgagcactgagagcaggcgggcctggatcgaagagaagagt
ctcattctcaaacagacttactgtgagatgcccaattacgacgtcatcatccctgttctg
ctaaacgaaggcatagacgagctacccaatcactgcaagctcactccaggtgtgccgttg
agacccatgttggctcaccccaccaagggcgtcggcgaggtgatgaagaggtttgacgag
gcggcgttcacctgcgaatacaaatacgatggagagcgagcacagattcacattctggag
agtggcgaggttcgcgtattcagtcgcaaccaggaagacaacaccagcaaataccctgat
atcatctctcgcattcccaaggtgaagaaggactctgtggtgtcgtgcgtcctggactcg
gaggcggtggcctgggatcgggagaagaaacagatccagcccttccaggtcctcaccacc
cgcaaaagaaaggacgtggatgcttctgagatcaaagtccaggtgtgcgtgtacgccttt
gacctgctctatctcaatggcgagtcgctggtgcgacagccgttgagtcggcgtcgggct
ctgctgaaagaaagcttctcagaggtagagggagagtttgtgttcgcccgatccatcgac
tccgacaacaccgacgccatcgcagagttcctggagcagtctgtccgagactcctgcgag
ggtctaatggtgaagactctggagaaggatgccacctatgaaattgccaagcgctctcac
aactggctcaagctgaagaaagactacctggacggagtgggcgacacagtcgacctgtgt
gtgattggcgcctacctgggaaaaggcaagagaacgggcacctacgggggcttcctgctg
gcctgctacgatgaggacaatgaggagttccagtcagtctgcaagatcgggacaggcttc
aaggatgaagatctggagcagcattacaagttcctaaaggagcacattctgcccaagccc
cgtgcctactaccgcatcgaccaatcagcagagcccgatgtgtggctggatgccgtgcag
gtttgggaggtgaagtgcgccgacctgtcgctgtcgcctgtctacaaggccgctatggga
atggtggatccagaaaagggcatttctctgagattccctcgcttccttcggatcagagac
gacaagaagcccgaggatgccacgaccggagctcagattgctgatttgtacaagaagcag
cagcagattcagaaccagggtgagaaagctgacccagaggactactactga
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