Empedobacter stercoris: HNV03_12445
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Entry
HNV03_12445 CDS
T06804
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
este
Empedobacter stercoris
Pathway
este03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNV03_12445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
este03400
]
HNV03_12445 (mfd)
Enzymes [BR:
este01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNV03_12445 (mfd)
DNA repair and recombination proteins [BR:
este03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HNV03_12445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
RE_LlaMI
UB2H
JIP_LZII
Motif
Other DBs
NCBI-ProteinID:
QNT15396
UniProt:
A0A9Q6V9T4
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All DBs
Position
2594246..2597614
Genome browser
AA seq
1122 aa
AA seq
DB search
MEQKTIHNVFSLYDSSDFVQKLIVNFKNNPHHKVNIKGFLGSGLSILTGHLYDRVARPTI
LIFDDKEEAAYVLNDLETLFDKEQILFFPSSYKRPYEVEEVNNANVVIRTEVLNVLSHSK
RPKIIVTYAEALSEKVVTKKALTTNTLKVKVGNDLGIDFLTEILSSYNFHRVDFVSEPGE
FSIRGGIIDVFSFSNEHPYRISLFGDEVETIRTFDIENQLSIATTKEITIIPNLESKSIN
EKRESFLEYIPKDSLIIAKNISVLAKQINRNFEQAEAAFSELKGEIKQAEPNQLFLNENG
FLQQISTFGVIECSMKSYFETIEEIESPFKPQPSFNKQFELLIDDLNEHKAEGFKNALIC
SNENQIKRFEEIFDDIGKEVSYIPVLGSIYQGFIDEEIKLTCYTDHQIFGRYHKFNLRNS
FSKKEAITLKEINSLQVGDFVTHIDYGIGKFAGLVRLNNNGVMQESIKLIYQNNDILYVN
IHSLHKIAKFRGKDGQEPKISKLGSPAWKNLKNKTKAKVKEIAFDLIKLYAKRRARKGFS
YSPDTYLQNELEASFIYEDTPDQYKATQDVKADMESERPMDRLVCGDVGFGKTEVAIRAA
MKAAVDGKQVAVLVPTTILAFQHFKTFSERLRDLPVKVAYLNRFVTGAKKKTVLDGLKSG
QVDIVIGTHQLVNPKIEYKDLGLLVVDEEHKFGVGVKDKLKTLRENIDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLVGFNEEVFRDAIMYEMQRGGQVYIIHNRVQSL
KDIAGMVQRLVPDARVATGHGQMEGKELEAVLLDFIDGRYDVFVSTTIIESGLDVPNANT
ILINDAQNFGLADLHQMRGRVGRSNRKAFCYLVAPPLSVLTDEARKRLQAIEQFSDLGSG
FNIAMKDLEIRGAGNLLGAEQTGFMMDIGFETYQKILNEAIEELKETDFKDLFEDQKTGE
VKSYVSDVQIDSDLQIMFPDEYIESSEERLLLYKELADIETENELETFKNNLIDRFGQLP
VEAENLLESIQLKWISKKLGFERLVMKKGVLLAYFINKPQSEFYQSDEFRIILNNVQNNP
KNISFKEKSPKKGEEYPTLLLRFEHIQNVHEALQSLQNLLIH
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttggaacagaaaactattcacaacgtttttagcttatacgattcttcagatttcgtacag
aagcttattgtcaattttaaaaataatccacatcataaagttaacatcaaaggattctta
ggttctggattaagcatcctaacggggcatttatatgatcgtgttgctcgtccaaccatt
ctaatttttgatgacaaagaagaagcagcttatgtgttgaatgatttagaaactttgttt
gataaagaacaaattctattttttccttcttcttataaacgtccttacgaggtagaggaa
gtgaacaacgcgaatgtggtcatacgcacagaagtattaaatgtgctttcgcattcaaag
cgaccaaaaattattgtgacctacgcagaagccttgtccgaaaaagtggtgacgaaaaaa
gcattgacaacaaataccttaaaagtaaaagttggaaatgatttagggattgattttttg
acagaaatattatcgtcttataattttcaccgagtagattttgtctccgaaccaggtgaa
ttttcgattcgtggagggattatagatgttttttcgttttccaacgaacatccatatcgt
atttcgttgtttggagatgaagttgaaacaatcagaacatttgatattgaaaatcaattg
tcaattgcgacaacaaaagaaattacgattattccgaatcttgaaagtaaatcaatcaat
gaaaaacgcgaaagttttttagaatatataccaaaagatagtttgattatcgctaaaaac
atttcagttttagcaaaacaaatcaatcggaattttgaacaagccgaagctgctttctca
gaactgaaaggtgagattaaacaagctgaaccgaatcaattatttttgaatgaaaatggt
tttcttcaacaaatttcaacatttggagtgatcgaatgttcgatgaaatcttatttcgaa
acaattgaagaaattgaatcaccttttaagccacaaccaagttttaataaacaattcgaa
ttattgatagatgatttgaatgaacataaagcggaaggttttaaaaatgcactgatttgt
tcgaacgagaatcaaatcaaacgtttcgaagaaatttttgatgatatcggaaaagaagtg
tcgtatattccagttttaggatctatttatcaaggtttcatcgatgaagaaatcaaatta
acgtgttatacggatcaccaaatttttggacgttatcataaattcaatcttcgtaattca
ttttcgaaaaaagaagccattacacttaaagaaatcaattcgttgcaagtgggtgatttc
gtgacgcatattgattatggaatcggaaaatttgcgggattagtacgtttaaataacaat
ggcgttatgcaagaatcgatcaaattgatctatcaaaacaatgatattttgtatgtcaac
attcattcgttgcataaaattgccaagtttcgagggaaagatggacaagaaccaaaaatt
tcaaaattaggttcgcctgcttggaaaaatttgaagaataaaacaaaagcaaaggtcaaa
gaaattgcttttgatttaatcaaattatacgctaaacggcgtgcaagaaaaggattttcg
tattcacccgacacgtatttgcaaaatgaattggaagcttcttttatttatgaagataca
cccgatcaatataaagcaacgcaagatgtaaaagctgatatggaatcggagcgtccgatg
gatcgtttggtttgtggtgatgttggtttcgggaaaacggaagtagcgattcgagcagca
atgaaagctgctgtagatggaaagcaagttgcagttttagtaccaacaacaattttagct
tttcagcattttaagacgttttcagaacgtttgagagatttacctgttaaggtcgcttat
cttaatcgatttgttacaggagcgaagaaaaagaccgttttagatggcttaaagtctggt
caagtggatattgtgattggtacgcatcaattggttaatccaaaaatcgaatacaaagat
ttaggtttattggttgttgatgaagaacataaatttggtgttggagtaaaagataaatta
aaaacacttcgcgaaaatattgatacattgacgttaacggctacaccaatccctcgtacg
cttcagttttcgttgatggctgcgcgtgatttatcagtgattaaaacgccaccaccaaac
cgtcaaccagtcgatacgcaattggtaggatttaacgaagaggtttttcgtgatgcaatt
atgtacgaaatgcaacgaggtggacaggtttatatcattcacaatcgtgtgcaatcgtta
aaagatattgctggaatggtacaacgtttagttcctgatgcgcgtgttgctactggacat
gggcaaatggaagggaaagaattagaagctgttttactcgattttattgatggacgttac
gatgtttttgtttccacaacgattatcgaatcgggattggatgttccgaatgccaataca
attttaatcaatgatgcgcaaaacttcggtttagccgatttgcatcaaatgcgtggtcgt
gtagggcgtagtaaccgcaaagcattttgctatttggttgcacctccgttgtctgtttta
accgatgaggctcgtaaacgtttgcaagcaattgaacagttttcagatttaggttctgga
tttaatatcgcgatgaaagatttagagatacgtggtgcaggaaatctattaggtgcagaa
caaactggatttatgatggatattggtttcgaaacgtatcaaaaaatcttaaatgaagcg
atagaagaattgaaagaaacggatttcaaagatttgttcgaagatcaaaaaacgggagaa
gtaaaatcctatgtttcggatgtgcagattgattcggatttgcaaattatgttcccagat
gaatatatagaaagttctgaagaacgtttattgttgtacaaggaattagctgatattgag
actgaaaatgagttagaaacgtttaaaaacaatttgattgatcgttttggtcaattacct
gttgaagctgaaaatttattagaatctattcaattgaaatggattagtaaaaaattaggt
ttcgaacgattggtcatgaaaaaaggcgtgcttttggcttattttattaataaaccacaa
agcgagttttatcaatcagatgaatttagaataattttaaataacgttcaaaataaccct
aaaaatatcagttttaaggaaaaatcacctaaaaaaggagaagaatatccaacattatta
ctgcgatttgaacacatacaaaacgtgcatgaagccttacaaagtctacaaaatttatta
attcattaa
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integrated database retrieval system
