Eleftheria terrae: N7L95_00510
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Entry
N7L95_00510 CDS
T09184
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
etb
Eleftheria terrae
Pathway
etb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
etb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N7L95_00510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etb03400
]
N7L95_00510 (ligD)
Enzymes [BR:
etb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N7L95_00510 (ligD)
DNA repair and recombination proteins [BR:
etb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N7L95_00510 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WKB52919
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All DBs
Position
complement(27699..30323)
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AA seq
874 aa
AA seq
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MPQALDRYWEKRDFNITPEPRGKAARAGKSLSFVIQKHAARRLHYDFRLELGGTLKSWAV
PKGPSLDPDDRRMAVHVEDHPLSYASFEGVIPPRQYGAGTVIVWDRGTWTPVGDPEAGYR
AGKLKFRLDGEKLQGHWTLVRMHGRGGERQEPWLLIKERDEAARPASQFSVVDELPDSVI
SGPGAATRRAASPAATESTAASKKPRRRAATAGELPDAAAPAALPLTLAPQLATLVEQVP
DSADYIYEAKFDGYRLLARIEGSEVRLFTRNGNDWTAKMSSLATALRGLKLASAWLDGEI
VVLDEHGVPDFNALQNAFDAARTEHIRYFLFDLPYYAGHDLRKVPLWQRRELLARLLERS
TSERLRFSQDFQAGAAEMLQSACRLRLEGVIGKRRDAPYVSRRSPTWIKLKCTHRQEFVI
GGYTEPKGSRSGLGSLLLGIHDEAGELRYAGNVGTGFDTRTLKLLREKLQALETERTPFA
GKPREAKGRWVEPKLVAEVSFSEWTPDGRIRHSVFHGLRSDKPARAITREVPATPANADT
APAPTPAKAGKAGKAPAPAPAKPAAGTAAGKATRRRSAPRPAELPEGLRISHPERVIDPS
SGATKLDLVTYYLRVADAMLPHLARRPVALVRAPSGIGGELFFQKHGDTLKMAGVRQLDP
TLDPGREPLLEIDSVEALIGAAQMNVIELHTWNATTRALEKPDRMTFDLDPGEGVSWDKV
AEAAQLTRTLLDELGLRSFLKTSGGKGLHVVVPLTPRHDWDTVKGFSQALVQHLARVVPS
RFVAKSGPRNRVGKIFVDYLRNGRGATTAAAFSARARPGMGVSIPCSWDELDDLEGGAQW
NIFTAPQRLSLDPWADYAATRQTLTAAMKSFGYQ
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagccctcgaccgctattgggaaaagcgcgacttcaacatcacccccgagccg
cgcggcaaggccgccagggccggcaagagcctgtctttcgtgatccagaagcatgccgcg
cgacggctgcactacgacttccggctcgaactgggcggcaccctgaagagctgggcggtg
ccaaagggccccagcctcgacccagacgaccggcgcatggccgtgcatgtcgaagaccat
ccactgtcgtatgcgagcttcgagggcgtcatcccgccgcgtcagtacggtgcgggcacc
gtcatcgtctgggaccggggcacctggacgccggtgggcgaccccgaggccggctaccgc
gcgggcaagctcaagttccggctcgacggcgagaagctgcagggccactggacactggtg
cgcatgcacggccgcggcggtgaacggcaggagccctggctgctgatcaaggagcgcgac
gaggcagcccgcccggcgtcgcagttcagcgtggtggacgagctgcccgacagcgtgatc
agcggcccgggtgccgcgacccggcgtgcggcgtcgcccgcagcgaccgaatcaacggct
gcaagcaagaagccgaggcgccgcgcggcgaccgccggcgagctgcccgacgccgccgca
ccagccgccctgcccctgacactcgctccccagctggccaccctggtcgagcaggtgccc
gacagcgccgactacatctacgaggccaagttcgatggctaccggctgctggcccgcatc
gagggcagcgaggtgcggctcttcacccgcaacggcaacgactggaccgccaagatgagc
agtctcgccaccgcgctacgcgggttgaagctggcttcggcctggctggacggtgagatc
gtggtgctcgacgagcacggcgtgccggacttcaacgccctgcagaacgccttcgacgcc
gctcgcaccgagcacatccgctacttcctgttcgacctgccctactacgccggccatgac
ctgcgcaaggtgccactgtggcagcggcgcgaactgctggcgcggctgctggagcgctcc
acgtccgagcgcctgcgattcagccaggactttcaggccggtgctgccgagatgctgcaa
agcgcctgccgtttgcgcctggaaggcgtgatcggcaagcgacgcgacgcaccctatgtg
agccgccgttcgcccacctggatcaagctcaagtgcacgcatcggcaggagttcgtgatc
gggggctacaccgagcccaagggcagccgctcaggccttggctccttgctgctcggcatc
catgacgaggccggcgagctgcgatacgccggcaacgtcggcaccggctttgacacccgc
acgctgaagctgctgcgggagaaactgcaggcgctggaaaccgagcgcacgcccttcgcc
ggcaagccgcgcgaagcgaagggccgctgggtggaaccgaagctggtggccgaggtgtcc
ttcagcgaatggacgccggatggccgcatccgccattccgtcttccacggcctgcgcagc
gacaagccagcccgcgccatcacccgcgaggtgcctgccacgccggccaatgccgacacg
gccccggcgcccacgccagccaaagccggcaaggccggcaaagccccggcccctgcgccc
gcgaagccggctgccggcaccgccgcgggcaaggcgacccgccgccgcagtgcgccccgc
ccggccgagctgccggaagggctgcgcatcagccacccggaacgggtcatcgaccccagc
agcggcgccaccaagctcgacctggtgacctactacctgcgggtggccgacgccatgctg
ccgcacctggcgcgccgtccggtggcactggtgcgggcgccgtcgggcatcggtggcgag
ctgttcttccagaaacacggcgacacgctcaagatggccggcgtccgccagctcgatccc
accctcgaccccggccgtgaaccgctgctggagatcgacagcgtcgaagccctgatcggc
gccgcacagatgaacgtcatcgagctgcacacctggaacgccaccacccgggccctggaa
aagcccgaccgcatgaccttcgacctcgaccccggcgaaggcgtgagctgggacaaggtg
gccgaggccgcccagctgacccgcacgctgctggatgaactcggcctgcgcagctttctt
aagaccagcggcggcaaggggctgcacgtggtggtgccgctgacgccccggcacgactgg
gacacggtcaagggcttctcacaggcgctggtgcagcacctggcgcgggtggtgcccagc
cgcttcgtggccaagagcggcccgcgcaatcgggttggcaagatcttcgtcgactacctc
cgcaatggccgcggcgccaccaccgccgccgccttctccgcgcgcgcccgtcccggcatg
ggcgtatccatcccctgcagctgggacgaactcgacgacctggaaggcggcgcgcagtgg
aacatcttcaccgcgccacaacgcctctcgctcgatccgtgggccgactacgccgccacc
cgccaaacgctcaccgccgcgatgaaatctttcggttaccaataa
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