Eleftheria terrae: N7L95_01720
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Entry
N7L95_01720 CDS
T09184
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
etb
Eleftheria terrae
Pathway
etb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
etb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N7L95_01720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etb03400
]
N7L95_01720 (mfd)
Enzymes [BR:
etb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N7L95_01720 (mfd)
DNA repair and recombination proteins [BR:
etb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N7L95_01720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
DUF4217
Motif
Other DBs
NCBI-ProteinID:
WKB53149
LinkDB
All DBs
Position
complement(297808..301251)
Genome browser
AA seq
1147 aa
AA seq
DB search
MHIPTIAPGKRYTVSRPPGSADALLLASFARQQAAARTLVAIVTAEPADAQRLHDELGFF
APELRCAVFPDWETLPYDTFSPHQDLISERLATLWRMRQGEVDVVLLPASTALVRLAPPS
FMAGYTFHFRQKARLDEASLKSQLTLAGYQHVSQVVSPGEYAVRGGLIDLFPMGSNVPYR
VDLFGDEVDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEDARARFRARWRERIEGDPSK
ARVYKDIGNGIATAGIEYYLPLFFEQTATIFDYLGAQAALALHGEIDEALKRFWNDTRER
HRFLQHDPERPLLPPEDLFLRPEDFFGLCNAHAQLAVRGQEPVDWARPLPDLGAERGAQE
PLRKLQVHVGTTPHRVLLVAESAGRRESLLELLRDNRIEPPSVESLAAFEAGDARFAIAV
APLAAGFHWLREGQAAGLQFITETELFATGPSTRRRRKQEQVSNVDALIKDLSELKVGDP
VVHVNHGIGRYQGLINLDLGDGPTEFLHLEYADKATLYVPVAQLHLISRYTGVSAEEAPL
HRLGSSQWDKAKRKAAEQVRDTAAELLNLYARRAAREGFAFRFSPHDYEAFAASFGFEET
PDQAAAIHAVIQDLISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPTTLLA
EQHFQTISDRFANWPVKVAELSRFRSGKEINQALKGLADGTVDIVVGTHKLLSQDVKFAR
LGLLIIDEEHRFGVRHKEAIKSMRSEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQR
RLAIKTFVRNESSGTIREAVLRELKRGGQVYFLHNEVETIENRREKLQELLPEARIVVAH
GQMPERELERVMRDFVGQRYNVLLCSTIIETGIDVPTANTIVISRADKFGLAQLHQLRGR
VGRSHHQAYAYLLVPDVEGLTKQAAQRLEAIQSMEELGSGFYLAMHDLEIRGTGEVLGEN
QSGNMQEVGFQLYNDMLSEAVRSLKAGREPDLLSPLSVTTEINLHAPALLPDSYCGDVHV
RLNLYKRLASAEKNDQIDALLEEVTDRFGKLPPQGQTLFDVHRLRVLAKPYGVLKIDAAP
TAMNITFRPNPPIDPMRIIELVQKNRNVKLTGNEKLRIERAYPEPKDRAQYIRDVLRALG
TPVAPAH
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcacatccccaccatcgcccccggcaagcgctacaccgtctcccgcccgcccggctcg
gccgacgcgctgttgctcgccagcttcgcccgccagcaggcggcagccaggaccctggtg
gcgatcgtcaccgcggagccggccgacgcgcagcgcctgcatgacgagctgggcttcttc
gcgccggagttgcgctgcgcggtctttcccgactgggagacactgccctacgacaccttc
tcgccccaccaggacctgatctccgagcggctggccacgctgtggcgcatgcgccagggc
gaggtggacgtggtgctgctgccggcatcgaccgcgctggtgcggctggcaccgccgtcc
ttcatggcgggctacaccttccacttcaggcagaaggcccggcttgacgaagcttcattg
aagtcgcagctcacgctcgccggctaccagcatgtgagccaggtggtctcgcccggcgag
tacgccgtgcgcggcggcctgatcgacctgttcccgatgggctcgaacgtgccctaccgg
gtcgacctgttcggcgacgaggtggattccatccgcaccttcgacccggacagccagcgc
agcctctacccggtgcccgaggtgcggctgctgccggggcgcgagttcccgatggacgag
gacgcccgcgcgcgctttcgcgcccgctggcgcgagcgcatcgagggcgacccgagcaag
gcccgcgtctacaaggacatcggcaacggcatcgcgacggccggcatcgagtactacctg
ccgctgttcttcgagcagacggccaccatcttcgactacctcggcgcgcaggccgctctg
gcgctgcacggcgagatcgacgaagcgctcaagcgcttctggaacgacacccgcgaacgc
caccgcttccttcagcacgacccggagcggccgctgctgccgcctgaagatctcttcctg
aggccggaggacttcttcggcctgtgcaacgcgcatgcgcagctggccgtgcgcggccag
gagccggtcgactgggctcgcccgctgccagacctgggtgccgagcgcggcgcccaggag
ccgctgcgcaagctgcaggtgcatgtgggcaccacgccgcaccgggtgctgctggtggcc
gagtcggccggccggcgcgagagcctgctggagctgctgcgcgacaaccgcatcgagccg
cccagcgtcgaatcgctggccgccttcgaggccggcgatgcgcgctttgcaattgctgtg
gcgccgctggccgccggtttccactggctgcgcgagggccaggcggccggcctgcagttc
atcaccgagaccgagctgtttgccaccggcccgagcacgcggcgtcgccgcaagcaggag
caggtcagcaatgtcgatgcgctgatcaaggacctgtcggagctgaaggtgggcgacccg
gtggtgcatgtcaaccacggcatcggccgctaccagggcctgatcaacctcgacctgggc
gacgggccgaccgagttcctgcacctcgagtacgccgacaaggcaacgctgtacgtgccg
gtggcccagctgcacctgatcagccgctacaccggcgtgagcgccgaggaggcgccgctg
caccggctcggctccagccagtgggacaaggccaagcgcaaggccgccgagcaggtgcgc
gataccgcggccgagctgctcaacctgtatgcccggcgcgccgcacgcgagggcttcgcc
ttccgtttctcgccgcacgactacgaggccttcgccgccagcttcggcttcgaggagacg
cccgaccaggctgcagccatccatgccgtcatccaggacctgatctcgccccgcccgatg
gaccggctggtgtgcggcgacgtcggcttcggcaagaccgaagtggcgctgcgggcggcc
tttgtcgccgtcaccggcggcaagcaggtggcgttgctggcccccaccacgctgctggcc
gagcagcatttccagaccatctccgaccgttttgccaactggccggtcaaggtggcggag
ctgtcgcgctttcgctccggcaaggagatcaaccaggcgctcaagggcctggccgacggc
acggtggacattgtcgtcggcacccacaagctgctgtcgcaggacgtcaagttcgcccgg
ctgggtctgctcatcatcgacgaggagcaccgctttggcgtgcgccacaaggaagccatc
aagtcgatgcgctccgaagtcgacgtgctgaccctcaccgccacgcccatcccacgcacg
ctgggcatggcgctggaaggcctgcgcgacctcagcgtgatcgccaccgcgccgcagcgg
cgactggccatcaagaccttcgtgcgcaacgagagcagcggcaccatccgcgaggcggtg
ctgcgcgagctcaagcgcggcggccaggtctacttcctgcacaacgaggtcgagaccatc
gagaaccggcgcgagaagctgcaggagctgctgcccgaggcccgcatcgtggtggcccat
ggccagatgcccgagcgcgagctggagcgcgtgatgcgcgacttcgtcggccagcgctac
aacgtgctgctgtgctcgaccatcatcgagaccggcatcgacgtgccgaccgccaacacc
atcgtgatctcgcgcgccgacaagttcggcctggcccagctgcaccagctgcgcgggcgc
gtcgggcgctcgcaccaccaggcctatgcctacctgttggtgcccgatgtcgagggcctg
accaagcaagcggcccagcggctggaagccatccagagcatggaggagctgggctcgggc
ttctacctggcgatgcacgacctggagatccgcggcactggcgaggtgctgggcgagaac
cagagcggcaacatgcaggaggtgggcttccagctctacaacgacatgctgagcgaggcg
gtgcgctcgctcaaggccgggcgcgagcccgacctgttgtcgccgctgtcggtcaccacc
gagatcaacctgcatgcgccggccctgctgcccgacagctactgcggcgacgtgcacgtg
cggctcaacctctacaagcgcctggcctcggccgagaagaacgaccagatcgacgcactg
ctggaggaggtcaccgaccgcttcggcaagctgccgccgcaaggccagaccctgttcgac
gtgcaccggctgcgcgtgctggccaagccctatggcgtgctgaagatcgacgcggccccc
acggcgatgaacatcaccttccggcccaacccgccgatcgacccgatgcgcatcatcgag
ctggtgcagaagaaccgcaacgtcaagctcaccggcaacgagaagctgcgcatcgagcgg
gcctacccggagccgaaggaccgggcccagtacatccgcgacgtgctgcgcgcgctcggc
acgccggtggcgcccgcgcactga
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