Edwardsiella piscicida C07-087: ETAC_09825
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Entry
ETAC_09825 CDS
T02509
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ETAC_09825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etc03400
]
ETAC_09825
Enzymes [BR:
etc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETAC_09825
DNA repair and recombination proteins [BR:
etc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ETAC_09825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
MFD_D3
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
dATP-dGTP_PPHyd
Motif
Other DBs
NCBI-ProteinID:
AGH74086
LinkDB
All DBs
Position
2230114..2233575
Genome browser
AA seq
1153 aa
AA seq
DB search
MSEQYRLTLPERYPLPARAGDVRQLGQLSGSACALECAEIAERHAGPVMLVVPDMQTALR
LRDEIPQFSRQWVTTLADWETLPYDSFSPHQDIISARLSCLYHLPGMERGIIILPINTLM
QRVCPHSFLHGHALVMKKGQRLSRDVLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPM
GSDEPYRIDFFDDEIDSLRLFDVDSQRTLNEVERIDLLPAHEFPTDQTAIELFRSQWREH
FEVRRDAEHIYQQVSKRIWPAGIEYWQPLFFNQPLPTLFSYLPAGTLLLGLGDLHQAAER
FWQDIEQRRASRGIDPMRPLLPPESLWMRVDELFAALKQWPRIQLTRDALDDHAGHTNLH
YQPLPTLAVEAQSKKPLANLQRFLAEFSGSVVFSAESEGRRETLLELLARIQVAPRLIAR
LEEAEPGGRYIMVGASEHGFINVPLALALICESDLLGERVSRRRQDSRRTINTDTLIRNL
AELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYAGDAKLYVPVSSLHLLSRYAG
GADDSAPLHRLGGDAWTRARQKAAEKVRDVAAELLDIYAMRAAKAGFAFRHDREAYQLFC
QGFPFETTADQEIAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTADGKVDILIGTHKLL
QNDVQWSDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPARRMAVKTFVREYDSLVVREAILRETLRGGQVYYLYNDVDTIQKAADRLATLVP
EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLA
QLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQMASVGFSLYMELLESAVTALKEGREPSLEDLTSQQTEVELRMPTLLPE
EMIPDVGTRLSFYKRIASASDGDTLADLRAELIDRFGALPDAARNLLQCAALRQQAAALG
IRRIEGHDKGGFIEFSEKNHVDPLYLIGLLQQQPGVFRLDGPSKLKFICDLSERQARLAF
VERLLADFAEHRI
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaataccgtcttaccctgccagaacgttacccgctgcccgcgcgcgcgggc
gacgtccgccaactgggccaactgagcggctccgcctgcgcgctggagtgcgccgaaatc
gctgagcggcacgccggccccgtgatgctggtggtgcccgacatgcagaccgccctgcgc
ctgcgcgacgaaattccccagttcagccgccagtgggtcacgaccctggccgactgggag
acgctgccctacgatagcttctcgccgcaccaggatatcatctccgcccgcctctcctgc
ctctaccatctgccggggatggagcgcgggatcatcatactgccgatcaatacgctgatg
cagcgcgtctgcccgcacagtttcctgcacggacacgcgctggtgatgaaaaaggggcag
cgcctgtcgcgcgatgtcctgcgcgcccagctggagcaggcgggctaccgcagcgtggat
caggtgatggagcacggggagttcgcgacccgcggcgccctgctcgacctgttcccgatg
ggcagcgacgaaccctatcgcatcgactttttcgacgatgagatcgacagcctgcgcctg
ttcgacgtcgacagtcagcgcaccctgaacgaggtcgagcgcatcgatctgctgccggcc
cacgagtttcccaccgatcagacggccatcgaactgttccgcagccagtggcgcgaacac
tttgaggtgcgccgtgacgccgagcacatctaccagcaggtcagtaaaaggatctggccc
gccgggatcgaatactggcagccgctgttctttaaccagccgctgccgacgctgttcagc
tacctgccggcgggtacgctgctgctggggctgggcgatctgcaccaggccgccgaacgc
ttctggcaggacattgagcagcgccgggccagccgcggcatcgacccgatgcgtccgctg
ctgccgccggaaagcctgtggatgcgcgtggatgaactgtttgccgccctcaagcagtgg
ccgcgcattcagctgacccgcgacgcactcgacgaccacgccggtcacaccaacctgcac
taccagccgctgccgaccctggcggtagaggcgcagagcaagaagcccctggctaatctg
cagcgcttcctggcggagtttagcggcagcgtggtgttcagcgcagaaagcgaaggccgc
cgcgaaaccctgctggagctgctggcgcgcattcaggtggcgccgcggctgatcgcccgg
cttgaggaggccgagcccggcggtcgctacatcatggtcggcgccagcgagcacggtttt
atcaacgtaccgctggcgctggcgctgatctgcgaaagcgatctgctcggcgagcgcgtt
agccgccgtcgccaggatagccgccgcaccatcaacaccgatacgctgatccgcaacctg
gcggagctgacgcccggtcaaccggtcgtacacctggagcacggcgtgggccgctacggc
gggatgaccaccctggaggcgggcgggatcaagggcgaatacctgatcctcagctacgcc
ggcgacgccaagctgtacgttccggtctcctcgctgcacctgctcagccgctacgccggc
ggtgccgatgacagcgcgccgctgcaccgcctgggcggcgatgcctggacccgcgcccgg
caaaaggccgcggaaaaggtgcgcgacgtggcggccgagctgctggatatctatgcgatg
cgcgccgccaaggcggggtttgccttccgtcacgaccgcgaggcctaccagctgttctgt
caaggtttcccgtttgaaaccaccgcggatcaggagatcgccatcaacgcggtgctcagc
gacatgtgccagccgctggccatggatcgcctggtgtgcggcgacgtcggcttcgggaaa
accgaagtggccatgcgcgccgccttcctggcggtgcacagcggcaagcaggtggcggtg
ctggtgccgaccaccctgctggcccagcagcactacgataacttccgcgaccgcttcgcc
aactggccggtgcgcattgagctgatctcccgtttccgcagcgccaaagagcaggcgcag
gtgctggcggacaccgccgacggcaaggtcgatattctgatcggcacccacaagctgctg
cagaacgacgtacagtggagcgatctggggctgctgatcgtcgacgaagagcaccgcttc
ggcgtacgccagaaggagcgcatcaaggcgatgcgcgccgatgtggatattctgacgctc
acggcgacgccgatccctcgcaccctgaacatggccatgagcggcatgcgcgatctctcc
atcatcgccaccccgccggcgcggcgcatggcggtaaagacctttgtccgcgaatatgac
agtctggtggtgcgcgaggccattctgcgtgaaaccctgcgcggcggtcaggtgtactac
ctgtacaacgacgtcgacaccatccagaaagccgccgatcgcctggcgaccctggtgccg
gaggcgcgcatcgccatcggccacgggcagatgcgcgagcgcgagctggagcgggtgatg
aatgattttcaccaccagcgctttaacgtattggtctgcaccaccataatcgaaaccggt
atcgatattcccagcgccaacaccatcatcattgagcgagcggaccactttggcctggcg
cagctgcaccagctgcgcgggcgcgtcgggcgctcgtatcatcaggcctatgcctacctg
ctcaccccaccgcccaaggcgatgaccgtcgatgcgcagaagcggctggaggcgattgcc
tcgctggaggatctcggcgccggctttgccctggcgacgcacgatctggagatccgcggc
gccggcgagctgctgggggacgatcagagcggtcagatggccagcgtaggcttctcgctg
tatatggagctgctggaaagcgcggtcacggcgctgaaagaggggcgcgaaccctccctg
gaggatctcaccagccagcagaccgaggtggagctgcgtatgcctaccctgctgccggag
gagatgatccccgacgtcggcacccgtctctctttctacaagcgtatcgccagcgccagc
gatggggataccctcgccgacctgcgcgcggagctgatcgatcgcttcggggcgctgccc
gatgcggcgcgtaacctgctgcagtgcgccgcactgcgccagcaggccgcggcgctgggg
atccgccggattgaggggcacgataaggggggattcatcgagttcagcgaaaagaaccac
gtcgatccgctgtatctgatcggcctgctgcagcagcagccgggcgtcttccgactggat
ggccccagtaagctgaagttcatctgcgatctcagcgagcgtcaggcgcgcctcgccttc
gtcgagcgtctgctggccgacttcgccgaacatcgcatctag
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