Edwardsiella anguillarum: ETEE_0056
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Entry
ETEE_0056 CDS
T03245
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ete
Edwardsiella anguillarum
Pathway
ete03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ete00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ETEE_0056 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ete03400
]
ETEE_0056 (mfd)
Enzymes [BR:
ete01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETEE_0056 (mfd)
DNA repair and recombination proteins [BR:
ete03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ETEE_0056 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
MFD_D3
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIJ06542
UniProt:
A0A076LI03
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All DBs
Position
46854..50390
Genome browser
AA seq
1178 aa
AA seq
DB search
MILSTLTSVEFPVLGDDVHEIRKRPMSEQYRLTLPERYPLPARAGDVRQLGQLSGSACAL
ECAEIAERHAGPVMLVVPDMQTALRLRDEIPQFSRQWVTTLADWETLPYDSFSPHQDIIS
ARLSCLYHLPGMERGIIILPINTLMQRVCPHSFLHGHALVMKKGQRLARDVLRAQLEQAG
YRSVDQVMEHGEFATRGALLDLFPMGSDEPYRIDFFDDEIDSLRLFDVDSQRTLNEVERI
DLLPAHEFPTDQTAIELFRSQWREHFEVRRDAEHIYQQVSKRIWPAGIEYWQPLFFNQPL
PTLFSYLPAGTLLLGLGDLHQAAERFWQDIEQRRASRGIDPMRPLLPPESLWMRVDELFA
ALKQWPRIQLTRDALDDHAGHTNLHYQPLPTLAVEAQSKKPLANLQRFLAEFSGSVVFSA
ESEGRRETLLELLARIQVAPRLIARLEEAEPGGRYIMVGASEHGFINAPLALALICESDL
LGERVSRRRQDSRRTINTDTLIRNLAELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYL
ILSYAGDAKLYVPVSSLHLLSRYAGGADDSAPLHRLGGDAWSRARQKAAEKVRDVAAELL
DIYAMRAAKAGFAFRHDREAYQLFCQGFPFETTADQEIAINAVLSDMCQPLAMDRLVCGD
VGFGKTEVAMRAAFLAVHSGKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSA
KEQAQVLADTADGKVDILIGTHKLLQGDVQWRDLGLLIVDEEHRFGVRQKERIKAMRADV
DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVKTFVREYDSLVVREAILRETLRG
GQVYYLYNDVDTIQKAADRLATLVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT
IIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKR
LEAIASLEDLGAGFALATHDLEIRGAGELLGDDQSGQMASVGFSLYMELLESAVTALKEG
REPSLEDLTSQQTEVELRMPTLLPEEMIPDVGTRLSFYKRIASAGDGDTLADLRAELIDR
FGTLPDAARNLLQCAALRQQAAALGIRRIEGHDKGGFIEFSEKNHVDPLYLIGLLQQQPG
VFRLDGPSKLKFICDLSERQARLAFVERLLADFAEHRI
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgatattatctacgctgacatccgttgagttccccgtattgggagacgacgtacacgag
atccgcaaacgccctatgtctgaacaataccgtcttaccctgccagaacgttacccgttg
cccgcgcgcgcgggcgacgtccgccaactgggccagctgagcggctccgcctgcgcgctg
gagtgcgccgaaatcgctgagcggcacgccggccccgtgatgctggtggtgcccgacatg
cagaccgccctgcgtctgcgcgacgaaattccccagttcagccgccagtgggtcaccacc
ctggccgactgggagacgctgccctacgacagcttctcgccgcaccaggatatcatctcc
gcccgcctctcctgcctctaccatctgccagggatggagcgcgggatcatcatactgccg
atcaatacgctgatgcagcgcgtctgcccgcacagcttcctgcacggccacgcgctggtg
atgaaaaagggccagcgcctggcgcgcgatgtcctgcgcgctcagctggagcaggcgggc
taccgcagcgtggatcaggtgatggagcacggcgagttcgccacccgcggcgccctgctc
gacctgttcccgatgggcagcgacgaaccctatcgcatcgactttttcgacgatgagatc
gacagcctgcgcctgttcgacgtcgacagccagcgcaccctgaacgaggttgagcgcatc
gatctgctgccggcccacgagtttcccaccgatcagacggccatcgagctgttccgcagc
cagtggcgcgagcactttgaggtgcgccgcgacgccgagcacatctaccagcaggtcagt
aaaaggatctggcccgccgggatcgaatactggcagccgctgttctttaaccagccgctg
ccgacgctgttcagctacctgccggcggggacgctgctgctggggctgggcgatctgcac
caggccgccgagcgcttctggcaggacattgagcaacgccgggccagccgcggcatcgat
ccgatgcgcccgctgctgccgccggaaagcctgtggatgcgcgtggatgaactgtttgcc
gccctcaagcagtggccgcgcattcagctgacccgcgacgcgctcgacgaccatgccgga
cacaccaacctgcactaccagccgctgccgaccctggcggtagaggcgcagagcaagaag
cccctggctaacctgcagcgcttcctggcggagtttagcggtagcgtagtgttcagcgcg
gaaagcgaaggccgtcgcgaaactctgctggagctgctggcgcgcattcaggtggcgccg
cggctgatcgcccggcttgaggaggccgagcccggcggccgctacatcatggtcggcgcc
agcgagcacggctttatcaacgccccgctggcgctggcgctaatctgcgaaagcgatctg
ctcggcgaacgcgtcagccgccgtcgccaggatagccgccgcaccatcaacaccgacacg
ctgatccgcaacctggcagagctgacgcctggacagccggtcgtacacctggaacacggc
gtgggccgctacggcgggatgaccaccctggaggcgggcgggatcaagggcgagtacctg
atcctcagctacgccggcgacgccaagctgtacgtgccggtctcctcgctgcacctgctc
agccgctacgccggcggcgccgatgacagcgcgccgctgcaccgcctgggcggcgacgcc
tggagccgcgcccggcagaaggccgcggaaaaagtgcgcgacgtggcggccgaactgctg
gatatctatgcgatgcgcgccgccaaggcggggttcgccttccgccacgaccgcgaggcc
taccagctgttctgtcagggcttcccgtttgaaaccaccgcggaccaggagatcgccatc
aacgcggtgctcagcgacatgtgccagccgctggccatggatcgcctggtgtgcggcgac
gtcggcttcgggaaaaccgaagtggctatgcgcgccgccttcctggcagtgcacagcggc
aagcaggtggcggtgctggtgccgaccaccctgctggcccagcagcactacgataacttc
cgcgaccgcttcgccaactggccggtgcgcattgagctgatctcccgtttccgcagcgcc
aaagagcaggcgcaggtgctggcggacaccgccgatggcaaggtcgatattctgatcggc
acccacaagctactgcagggcgacgtacaatggcgcgatctggggctgctgatcgtcgac
gaagagcaccgcttcggcgtgcgtcagaaggagcgcatcaaggcgatgcgcgccgatgtg
gatattctgacgctcacggcgacgccgatcccgcgtaccctgaacatggcgatgagcggc
atgcgcgatctctccatcatcgccacccctccggcacggcgcatggcggtaaagaccttc
gtccgcgaatatgacagcctggtggtgcgcgaggccattctgcgtgaaaccctgcgcggc
ggtcaggtgtactacctgtacaacgacgtcgacaccatccagaaagccgccgatcgcctg
gcgaccctggtgccggaggcgcgcatcgctatcggccacggccagatgcgcgagcgcgag
ctggagcgggtgatgaacgacttccaccaccagcgctttaacgtattggtctgcaccacc
attatcgaaaccgggatcgatattcccagcgccaataccatcatcattgagcgggcagac
cactttggcctggcgcagctgcaccagctgcgcgggcgcgtcggacgctcctaccatcag
gcctatgcctacctgctcaccccgccgcccaaggcgatgaccgtcgatgcgcagaagcgg
ctggaggcgattgcctcgctggaggatctcggcgccggctttgccctggcgacgcacgat
ctggagatccgcggcgccggcgagctgctgggcgacgatcagagcggtcagatggccagc
gtcggcttctcgctgtacatggagctgctggaaagcgccgtcacggcgctgaaagagggg
cgcgaaccctcgctggaggatctcaccagccagcagaccgaggtggagctacgtatgcct
accctgctgccggaggagatgatccccgacgtcggcacccgtctctccttctacaagcgt
atcgccagcgccggcgacggggataccctcgccgacctgcgcgcggagctgatcgatcgc
ttcgggacgctgcccgatgcggcgcgtaacctgctgcagtgcgccgcgctgcgccagcag
gccgcggcgctggggatccgtcggatcgaggggcacgataaggggggattcatcgagttc
agcgaaaagaaccacgttgatccgctgtatctgatcggcctactgcagcagcagccgggg
gtcttccggctggacggccccagcaagctgaagttcatctgcgatctcagcgaacgtcag
gcgcgcctcgccttcgtcgagcgtctgctggccgacttcgccgaacatcggatctag
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