Echinops telfairi (small Madagascar hedgehog): 101644705
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Entry
101644705 CDS
T08707
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X5
KO
K12821
pre-mRNA-processing factor 40
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101644705 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etf03041
]
101644705 (PRPF40B)
Spliceosome [BR:
etf03041
]
Complex A
U1 snRNP components
U1 related factors
101644705 (PRPF40B)
Complex B
101644705 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
RhoGAP-FF1
DUF4936
Motif
Other DBs
NCBI-GeneID:
101644705
NCBI-ProteinID:
XP_004711460
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MMPPPFMPPPGVPPPFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPMGAPPPLTQIPGMVP
PMMPGMLMSAVPVTAATAPGVDTASSAVAGTGPLRALWSEHVAPDGRIYYYNADDKQSVW
EKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDELEALVKQESAG
KQQPQPPQPQPDPPPVPPGPTPTTVGLMEPEPGGSEDCDVSEAVQPTEHPEESPSSSAGQ
HQPPQQEEEESKPELERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRY
SALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQ
TFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKTILDGMSSVSFQT
TWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQR
KNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEEL
KARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKA
EAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDPAFEQITLESE
RIRLFREFLQVLETECQHLHTKGRKHGRKGRKHHRKRSHSPSGSESEEEELPPPAFRPPK
RRRRNPSESGSEPSSSLDSVESGGATVGGQGSPSSRLLLSSDHGLRKVKKPKKKPKKRRH
KSNSPESETDPDEKAGKESDEKEQEPDKEPEPRRAELAHRSPGFRVKKEKTGWDTSESEL
SEGELERRRRTLLQQLDDHQ
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaccacccttcatgccccctccaggggtgcccccgcccttccctccaatgggg
ctaccccctatgagtcagagaccaccagccattccccccatgccacctggcatcatgcct
cccatgcttccaccaatgggggcaccaccaccactcacacagataccaggaatggtccct
cccatgatgccaggaatgctgatgtccgcggtgcccgtcaccgccgcgacggctccaggt
gtggacaccgccagctctgctgtggccgggacgggtcccctgagggccctgtggagcgag
catgtggcccctgatgggcgcatctactactacaatgctgatgacaagcagtccgtgtgg
gagaagcccagcgtgctcaagtccaaggccgagttgctgctctcccagtgcccctggaaa
gagtataagtcagacacaggcaaaccgtactactacaacaaccagagtaaagagtcccgc
tggacccggcccaaggacctggacgagctggaggctttagtcaaacaggagtctgcaggg
aagcagcagccgcagccaccccaaccccagcctgatcccccacctgtgcctcctggcccc
accccaacgaccgtgggcctcatggaacctgagccaggtgggagtgaagactgtgacgtg
tccgaagctgtgcagcccacggagcacccagaggagagtcccagcagttctgctggacag
catcagcctccacagcaggaagaggaggaatcgaagccagaactagagaggtctggcctc
agttggagcaaccgggagaaggcaaagcaggcattcaaggagctgctgagggacaaggct
gtcccctctaacgcctcgtgggaacaggccatgaagatggtggtcactgacccccgttac
agtgccttgcccaaactgagtgagaaaaagcaggcattcaatgcctacaaggctcagcgg
gagaaagaggagaaggaggaggcccggctgcgggccaaggaggccaaacagacgctgcag
catttcctggagcagcatgagcggatgacctccacgacacgctacaggcgggcggaacag
accttcggggagctggaggtctgggctgtggtccctgagagggaccggaaagaggtttat
gatgatgtcctcttcttcctggccaagaaggagaaggagcaggccaagcagctgaggcgc
cgcaacatccaggccctgaagaccatcctggacggcatgagcagcgtcagcttccaaacc
acgtggtctcaggcccagcagtacctcatggacaatcccagctttgcccaggaccatcag
ctgcagaacatggacaaggaagatgcgctcatctgctttgaggagcacatccgagctttg
gagagggaggaggaggaggagagggagcgggctcggctgcgagagcggcgccagcagcgc
aagaaccgggaggccttccagaccttcctggatgagctgcacgagacagggcagctgcac
tctatgtccacctggatggagctgtacccagcggtcagcactgatgtccgctttgccaac
atgctgggccagccgggctccacccctctggacttgttcaagttttatgtggaggagttg
aaagcccgcttccatgatgagaagaagatcattaaggacattcttaaggaccggggcttc
tgcgtggaggtgaacacagcttttgaggacttcgcccacgtcataagctttgacaagagg
gccgctgcgctggacgcaggcaacatcaagctgaccttcaatagtctgctggagaaagcc
gaggcccgagagagggagcgggagaaggaggaagcgcgcaggatgaggcgcagagaagct
gcctttcgaagcatgctgaggcaggctgtgccggccctggagctgggcactgcctgggaa
gaggtccgagagcgctttgtgtgcgacccagcctttgagcagatcaccctggagtcggag
cggatccggctcttccgggagtttctgcaggtgctggagaccgaatgccagcacctccac
acaaaaggccgcaagcatggcaggaagggcaggaagcaccaccgcaagcgctcccactcg
ccctcgggctcggagtcggaagaggaggagctgcccccaccggccttccggccccccaag
cggaggcggcggaacccttcagagtctggctctgagccctcttcctcactcgactcagtt
gagagtgggggtgctactgttgggggacagggctccccatcctcgcgcctcctcctcagc
tcagatcatggcctccggaaagtcaagaaaccaaaaaaaaaacccaagaagagaagacac
aagtcgaacagtcccgagagtgagacggaccccgatgagaaggctggcaaggagagcgat
gagaaggaacaggaaccagacaaggagccagagccccggcgggcagagctcgctcaccgc
tccccgggcttcagagtcaagaaggagaagacaggttgggacacgtcggagagtgaactg
agcgagggcgagctggagcggcggcggcgcaccctcctgcagcagctggacgaccaccag
tga
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