Echinops telfairi (small Madagascar hedgehog): 101660876
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Entry
101660876 CDS
T08707
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X6
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03013
Nucleocytoplasmic transport
etf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101660876 (UPF1)
03015 mRNA surveillance pathway
101660876 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101660876 (UPF1)
Enzymes [BR:
etf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101660876 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101660876 (UPF1)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101660876 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101660876 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101660876
NCBI-ProteinID:
XP_004705305
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGAGGAG
GPGGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQ
THDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQ
KNRFGLPGPSQTTLPSSQASQDVVSQPFSQGALTQGYVSMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVPGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagactctcaccttcctggacacggaggag
gccgagcttctgggcgccgacacgcagggctccgagtttgagttcaccgacttcaccctt
cccagccagactcagacgcccccgggcggtcctggaggccccggggccggcggcgctgga
ggcccgggcggcgcgggcgctgcggccggacagctcgacgcgcaggttggtgggcccgag
ggcatcctacagaatggggccgtggacgacagcgtggctaagaccagccagttgctggca
gagctaaactttgaggaggacgaggaggacacctactacaccaaggacctccccgtccat
gcgtgcagttactgtgggatccacgaccccgcctgcgtggtgtactgcaacaccagcaag
aagtggttctgcaacgggcgtgggaacacctccggcagccacatcgtcaaccacctcgtg
agggccaagtgcaaggaggtgacgctgcacaaggacgggccactgggcgagacggtgctg
gagtgctacaactgcggctgccgcaacgtcttcctgctcggcttcatccctgccaaggcc
gactcggtcgtggtgctgctgtgcaggcaaccatgcgccagccaaagcagcctgaaggac
atcaactgggacagctcgcagtggcagccactgatccaggaccgctgcttcctgtcgtgg
ctggtgaaaatcccctccgagcaggagcagctgcgggcacggcagatcaccgcgcagcag
atcaacaagctggaggagctctggaaggagaacccgtcagccacgctggaggacctggag
aagccaggcgtggatgaggagccgcagcacgtgctcctgcgctatgaggatgcctaccag
taccagaacatctttgggccgctggtcaaactggaggctgactacgacaagaagctcaag
gagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagaga
atcgcctacttcactttgcccaagactgactctgacatgcggctgatgcagggggacgag
atctgcctacgctacaagggggacctggcgcccctgtggaaagggatcggccacgtcatc
aaggtccctgacaactacggcgatgagattgcgattgagctgcggagtagcgtgggcgcc
ccggtggaggtgacccacaacttccaggtggacttcgtgtggaagtcgacttcgtttgac
aggatgcagagcgcactgaagacgtttgcggtggacgagacctccgtgtccggctacatc
taccacaagctgctgggccacgaggtggaggatgtcatcatcaagtgccagctgcccaag
cgcttcaccgcccagggcctccccgacctcaaccactcccaggtgtatgccgtgaagacg
gtgctgcagaggcctctgagcctgatccaggggccgccgggcactggcaagaccgtgacc
tcagccaccatcgtctaccacctggcacggcaaggcaacgggccggtgctggtgtgcgcc
cccagcaacattgcggtggaccagctgacggagaagatccaccagacggggctgaaggtg
gtgcggctctgcgccaagagccgtgaggccatcgactcccccgtgtccttcctggcgctg
cacaaccagatcaggaacatggatagcatgccagagctgcagaagctgcagcagctcaag
gatgagaccggggagctgtcgtcagcggacgagaagcgataccgggccctgaagcgcact
gctgagagggaactgctcatgaatgcggacgtcatctgctgcacgtgtgtgggtgcaggc
gaccctcggctggccaagatgcagttccgctccattctcattgatgagagcacgcaggcc
accgagcccgagtgcatggtgcctgtggtcctaggggccaagcagctgatcctcgtgggc
gaccactgccagctgggccctgtggtgatgtgcaaaaaggcggctaaggccggcctgtca
cagtcgctgtttgagcgactcgtggtgctgggcattcggcccatccgcctgcaggtgcag
taccggatgcaccctgcactcagcgcttttccctccaacatcttctacgagggatccctg
cagaacggtgtgaccgcagcggatcgtgtgaagaagggctttgacttccagtggccccag
cccgacaagcccatgtttttctacgtaactcagggccaagaggagatcgccagctccggt
acttcctacctgaaccggacggaagctgccaatgtggagaaaatcactacaaagttgttg
aaggcgggtgccaagccagaccagattggcatcatcactccctacgagggccagcgctcg
tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaagtg
gagatcgccagcgtggacgccttccagggccgagagaaggacttcatcatcctctcgtgt
gtgcgggccaatgagcaccagggcattggcttcctcaacgacccccggcgcctcaatgtg
gccctgaccagggcaaggtacggggtcatcattgtcggtaacccgaaggccctgtcaaag
cagcccttgtggaaccacctgctgaactactacaaggagcagaaggtgctggtggagggg
cccctcaacaatctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaacccgggagcccgctttatgaccaccgccatgtatgacgcccgtgaggccatc
atcccagggtccgtgtacgaccgcagcagccaaggtcgtccctcaagcatgtacttccag
acccatgaccagattggcatgatcagtgcaggccccagccacgtggcggctatgaacatc
cccatccccttcaatctggtcatgccacccatgccaccgcctggctactttgggcaggcg
aatggcccggccgcaggccggggcaccccaaaaggcaaaacaggccgcggaggacgtcag
aagaaccgctttggtctcccaggacccagccagaccacgctccccagcagccaggccagc
caggacgtggtctcgcagcccttctcgcagggcgcactgacacagggctacgtctccatg
agccagccctcacagatgagccagccagggctctcccaaccggagctgtcccaggacagt
tacctcggggatgagttcaagtcccagattgacgtggcgctatcacaggactccacgtac
cagggagagcgggcctaccagcatggcggggtccctgggctgtcccagtattag
DBGET
integrated database retrieval system
