Empidonax traillii (willow flycatcher): 114057779
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Entry
114057779 CDS
T05887
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114057779 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etl03021
]
114057779 (PCF11)
03019 Messenger RNA biogenesis [BR:
etl03019
]
114057779 (PCF11)
Transcription machinery [BR:
etl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114057779 (PCF11)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114057779 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
INCENP_ARK-bind
Motif
Other DBs
NCBI-GeneID:
114057779
NCBI-ProteinID:
XP_027740266
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MSAPESNAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAASKQHMSPTPHMTVKPPHQTAVQSEKNRPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPNVTSQSDTKANKTAQGEKQNSTKSEKSKASEKTQKKELDQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKMGEHRPVGSRNKVINGAVQKQDMSTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKPSHVEESTQAARDERSSS
KRNVKQEVRDPRRVKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNDEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPEDILDYHVPDALLSGIECEQAKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFADNLSPLESRRRLEEQRATKGARGSDPYDSWAESDEFR
DALRQQGKSTADFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEK
APFPDSPGSRFGGIEAKQRISALMEDRPLFDGSPRPAAARVGVDGQGSPFVDGPAAGSSS
RIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGSGVGLRFEGPRGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFDGPHLQPLGPHGQPGGGLRFEGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLDGPHGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRLGPGQQAQARFETAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNMPMGSNQVSLMSAQPGPY
GQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLKTGILKLSKTDSTSAQA
NETSAQPAAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPDDTPPP
ACAEESTPASTDIKTEPEESV
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcaacgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcgtcagagaagcttcctgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgatcaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctactatagcttcagttccagcagcttccaaacaacatatgtctcccacacct
catatgacagttaaaccgcctcatcagactgctgtgcaatctgaaaaaaacagaccatcc
ccaagtcctccacttcatgatatcaaaattgtaaacagggatcctcgacttaataggatg
ggtcaacattcttcacatactaaagatcaatctcataggaaagaattttcaccgaatgtg
accagccagtctgataccaaggcaaacaaaacagcacaaggtgaaaagcagaactctaca
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaccaatccaaa
gcaaaatctaaatcaccatcccctttgaaaaataagctacccgatactaaagatagtaaa
agtcaggaatgtgaaagcactaaagtgtctgacattagtaagcgggatccaaggctgaaa
agacatcttcaagacaagtcagagggcaaagaagaggaggtcaaagaaaagaggagaagt
acagagaaaaaggaaaaagaggagcataaaatgggtgaacacagaccagtggggagcaga
aataaagtgattaacggtgcagttcagaaacaagacatgagtacagaggaatcagaaaaa
cagggtggaaaacagggaagatcaagtagtagaaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacacattctccaaaaagaagagagaggagatcacctaaaagaaga
cttaggagtttatctcctacttcatcaactcctaaaattggcaagatacgtcagataggc
cctaagccgtctcatgttgaagaaagcacacaagcagcaagagatgaaagaagttctagt
aagagaaatgttaagcaagaggtgcgagatccaaggagagtgaaaaaagcccaagaggaa
agaccacaagaaacagccacccagcattctgcaaaagcttctccagatccaaaggagaat
gcagaaaactggcaagggtccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgatgaacaccaagcacttggtaaatcccctcaccaaagacac
agggaaaactggcctgctggtaaaggaattttatcaccccgagcaccaaagcagcagcac
cgtttaagcgtggatgccaatttacagattcccaaggaattgacatctgcaagcaagaga
gaattacttaagaaggcaaacgaccgcttaacatctggtgaaataacacaagatgagttc
ctcgtggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttttatca
gatgcagaattaacatattatgaacataaagctaaactaaaaaggacacaagttcagcat
tcactgtcaaggcttgatctgttggatcctgaagatattttggattatcatgtacctgat
gcattgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagtttgac
agaaaagaaccatttgcagaacgatcaaggagacactctcctgtaagtggcactacgagg
ccttttgctgataacctgtcaccacttgagagtcgacgaagacttgaagaacagcgtgct
actaaaggagcaagaggttccgatccttatgacagctgggcagaatcagatgaatttaga
gatgctctcaggcaacaggggaaaagcacagcagacttccagaaaatcgatggagatgca
ctttgcaggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaagatcaccgttcagtgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccatttccagacagtccaggatctagatttggaggtattgaagcaaagcagaggata
agtgcattaatggaagacagacctctctttgatggctcacctagaccagctgctgcaagg
gttggagtagatggacaaggaagtccttttgttgacggtcctgctgctggttcaagttcc
agaattgatgggccacctggacaggctgctatgagatttgaggggcctttggtgggggca
ggtgcatctcagtttgatggaccactggcaggagcaggaggagctggagccctgagattt
gatgggccaccagggcagctggcaggggccctgaggtttgaaggacccccaggacaggtt
ggtggaggaggtcctctgagatttgagggacctcttgggcctctgaggtttgaggggcct
gcagggcagcctgtaggtggtcctagatttgaaggatctggagttggtctcaggtttgag
ggtccacgtggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcagccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgatgggccacatttacagccattg
gggccccatggacaacctggaggtggcctcagatttgagggtccacatggtcagcctatg
gggccacatggaccgtcaggtggtgggctcagatttgaagggccacatgggccatcgggt
ggtgggctgagattggatggaccacatggtcagccaggtctaggtcctaggttgattgat
ggaccggtgcaccagggagctggtggacttagatttgatggtcctttgggtcgggccggt
ccgagatttgatggctgtcatgcagctggatttgatggtcagcctggacagctgtctctc
ctgcaaagatttgatggaattcatggacagcctggtccaagactgggacctggtcaacag
gcacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcc
tctagatttgacttgccccttggccttcaaggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccttttgttgaacatcct
ggccagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgat
ggttcgcctggaccaaatttcaatgggccagctggcccaggagcacagaacttcccactg
agagcagctggacattactttgatgaaaaaggtcttcagggtcctcaatatggaaatttc
aataatatgccaatgggaagtaatcaggtttctctcatgtctgctcaaccaggaccttat
ggccaaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagcc
cttccacattcgtatcctgataaccatctgggacagcttgatgtcaatgaattgtttgct
aaactgctgaaaacagggatcctcaaattatcaaaaactgattccacttcagcacaagcg
aatgaaacatcagcccagccagctgctgaagaagaagatgatgatcagaatgaagatcaa
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagcgtt
ataaatcgactgtacactggaattcaatgttactcatgcggaatgagattcactacttca
cagacagatgtttatgcagatcatttggattggcattatcgccagaataggacagaaaaa
gatgttagcagaaaaattacacaccggagatggtactacagtttaacagactggattgag
tttgaagaaatagcagatctagaggaacgtgctaaaagccagttctttgaaaaagctcat
gaagaggttgtgttgaagacacaagaagctgcaaaagagaaggagtttcagagtgtcccg
gctggaccagctggagcagttgagagctgtgaaatttgccaagaacaatttgaacaatat
tgggatgaggaagaggaagagtggcacctgaagaatgctatcagagtagatgaaaagatt
taccatccatcttgttacgaagattatcaaaatacatcatcattcgactgcacaccatct
cccagcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaa
acagaagagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctcct
gcctgtgcagaagagagcacacctgcatctacagatataaaaacagaacctgaggaatct
gtttaa
DBGET
integrated database retrieval system
