Empidonax traillii (willow flycatcher): 114058431
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Entry
114058431 CDS
T05887
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114058431 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
etl03000
]
114058431 (CNOT4)
03019 Messenger RNA biogenesis [BR:
etl03019
]
114058431 (CNOT4)
04121 Ubiquitin system [BR:
etl04121
]
114058431 (CNOT4)
Enzymes [BR:
etl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114058431 (CNOT4)
Transcription factors [BR:
etl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114058431 (CNOT4)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114058431 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114058431 (CNOT4)
Ubiquitin system [BR:
etl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114058431 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
Nup35_RRM_2
DZR_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
114058431
NCBI-ProteinID:
XP_027741586
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRYDAPNSNNKDAWPSLQSSSKSANGLTMEH
RKTPPILENGTDPEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTK
PNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSDWPTAP
EPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQ
PSLSPTSLQNPTPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQQHRAVYNS
FSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISDNSSSV
ESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLNWDSPGSWMD
PAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLHR
ASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccctctttgcatggagcct
ctggaaattgatgacatcaatttcttcccttgcacctgtggctaccaaatttgtcgtttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccttac
ccagaagacccagcagtgtacaaaccactctcccaggaagagctgcagaggataaaaaac
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaaccgcaaacatttg
gccagtgtacgggttgtacagaagaaccttgtcttcgtggtagggctatctcagcgccta
gcagatccagaggtgttgaaacgaccagaatattttgggaagtttggtaaaatacacaaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgccctcagagccatacagtgtgtcaataacgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgaactaggtgatgaagca
gccagtttcacaaaagaagaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccaattatctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagaggtatgatgcacccaacagtaataacaaa
gatgcctggccatcattacagagttcaagtaaatcagccaacggtttaacaatggaacac
aggaaaacgcctcctatattagaaaatggcacagacccagaacacatgactccagatggt
gcagactcagatttcggccctatcgataaaccttcagattccctcagtataggaaatggt
gacagctctcagcagataacaaacagtgacacaccttcaccacctcctggtttaacaaaa
cccaatccagttatacccatcagttcatctaatcacagtgcgcggtctccttttgaaggg
gctgtaacagaatcacagtcactcttctctgacaacttccggcaccctaatcccatccct
agtgggcttcctccatttcccagctctccacagacttcaagtgactggcccacagcacca
gaaccacagagcctcttcacatcagaaactataccagtgtcctcctccacagactggcaa
gcagcttttgggtttggttcctccaaacagcaagaggacgacttagggtttgaccccttt
gacatcacccgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccaa
ccttccctttcgcccacatctcttcagaacccaaccccacacactacaactgccaaaggg
ccaggctctggattcctgcatcctgctgcacccacaaatgccaactctctcagtagcacc
tttccagtcatgccacagaggttcccacagtttcagcaacatcgagcagtttacaactcc
ttcagttttccaggccaagcagctcgctatccttggatggccttcccacgcaatagcatc
atgcacttgaaccacacagcaaatcccacctcaaatagtaatttcttggacttgaatctc
ccaccacaacacagcacaggtctgggagggatccctatatcagacaacagcagttctgta
gagagtttaaatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaac
atcaactttggtggactgcccaatgcttcttccccctccaacgccaaccacagtgtacca
acgtccaacactgccaccaccgacagcctgaattgggacagccctggcagctggatggac
cccgcaatcatcacaggtatcccagcctccacaggaaacagtttagacacccttcaagat
gacaatcctccacattggctaaaatctcttcaggccctcacagaggtggacggccccagt
gcagcgccatcacagacgcaccacagtaaccccttcggcacacagatccctctgcacaga
gccagttggaatccctactctcctccttcaaaccccaccagcttccattccccacctcca
ggctttcagacagccttcagaccccccagtaaaacccccacagatctactacagagctca
gcgctggatcgtcattag
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integrated database retrieval system
