Empidonax traillii (willow flycatcher): 114061194
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Entry
114061194 CDS
T05887
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114061194 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etl03400
]
114061194 (LIG4)
Enzymes [BR:
etl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114061194 (LIG4)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114061194 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
114061194
NCBI-ProteinID:
XP_027747144
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASTPVSQPPKKTVASHVPFADLCATLERIQKCKSRPEKTKYFKDFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLHLPKDGKDAAKLLNYRTPT
GSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIASNNAAKNKGQLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCIQLHDPSVSLS
DVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHIVNKKSARTRKEVID
ALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKYWKPYHRKDPPC
NILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMTS
DMLEDLRSKAEGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVNKVS
NVFEDVEFCVMTGTGKYTKSELESRIAECGGSVVQNPGPETYCVIAGAENVRVRNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLKE
VFSRVKNNKAMPLDVIAEIEERYSWNNCQLSIFRGNTIYVDCYAVVNEPKSKIPGITLSI
RALELRFYGAKVVSHLADGVSHVVIGEDHSRVKEMKALRRTFGKKFKIVTELWVTESVEE
GVAKNENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctgtgtcgcagcctcccaaaaaaacagtggcctctcacgtgcctttt
gcagatctgtgcgctactctggagcgaatacagaagtgtaaatctcgtccggagaaaacc
aagtattttaaagattttctggattcctggaggaaattccatgatgcacttcaccaaaaa
gagaaagatgtcacagattccttttacccagctatgcggcttattcttccacagctggaa
agagaaaggatggcgtatggaattaaagaaactatgcttgcaaagctgtatattgaactg
cttcatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacctacg
ggctcacgtggagacgctggagattttgcaatgatcgcatactttgtgctgaaacctagg
agcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatgcgatagct
agtaataatgctgcgaaaaacaagggtcagttaaagaaaagccttcttcagttaattacc
cagagcacagcactggaacaaaaatggcttatccggatgattataaaggatctaaagctt
ggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattacacaac
gtcacaactgatttggaaaaagtttgcatacagctgcatgatccctctgtctcacttagt
gatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgccattgcagatgtc
cagcaaatcgagaaacaaatgaataaccaggtattctacatagaaaccaagctggatggt
gagcgtatgcagatgcacaaagatggggatgtgtataaatatttttccagaaatgggttt
gactatactcagcagtttggtgcatcaccccttgaaggttcattaacgccatttattcat
aatgtatttaaaagcaatatacaaaattgcattcttgatggtgaaatgatggcttacaat
cctgagacgcaaacctttatgcaaaaaggaaacaaatttgacataaaaagaatggtggag
gactctgatctgcagacctgcttctgtgtgttcgacgtgttgatggttaacgatcagaag
ttggggcacgaagtactaagcaaaagatacgaaatcttaagtagtgtatttaccccggtg
aagggcaggattcatattgtaaataagaaaagtgccagaacaagaaaagaagtaattgat
gctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatgtcc
acctacaaacctgacaaacgcggggaaggctggttaaaaatcaagccagaatatgtcaat
ggactgatggatgagctagaccttttaattgttggtggttactggggtaaggggtcacgt
ggtgggatgatgtctcattttctgtgcgctattgcagagacgccccctccaaatgaaaaa
ccaaccattttccactcaatttgtcgtgttggctctggctatactatgaaggagttgtat
gatctaggcttgaaactggctaaatactggaagccctaccataggaaggaccctccctgt
aacattttatgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtcata
gttcagatcaaggcagccgagattgttgacagtgatatgtacaaaactgactgtactttg
agattcccccgaatcgagaagataagagaggataaagaatggtatgagtgcatgacttca
gacatgttagaagatctcagaagcaaagcagaagggaaactggcatctaagcaccttcat
atagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgaggaag
gtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaaacaaggtttca
aatgtatttgaagatgttgagttttgtgttatgacaggaacagggaaatacacaaagtct
gagctggaaagcagaatagccgaatgtggtggcagtgtggtacagaacccggggccagag
acttactgtgtcattgcaggagctgagaacgtcagagtgagaaacatcattgcttccaac
aaatacgatgtggtgagggcagagtggctccttcaatgttttcaaaccaaaatgctggtg
ccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacacagcaaacacagatgttgcacagctcaaggaa
gtgttctcaagagtgaaaaacaataaagcaatgcctttggacgtaattgcagagatagaa
gaacgttattcatggaacaattgtcagctcagtatattcagaggaaacactatttatgtg
gactgttacgctgttgttaatgagcctaaaagcaaaatccctggcataacactatcaatt
agagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgcagatggcgtc
tcccatgttgttataggagaagatcattcccgggtaaaagagatgaaagcactcaggaga
acatttggtaaaaaattcaaaattgtaactgagctgtgggtaacagagtcagtggaggaa
ggagtcgcgaagaatgaaaatcagtacttagtttaa
DBGET
integrated database retrieval system
