Empidonax traillii (willow flycatcher): 114064975
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Entry
114064975 CDS
T05887
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03013
Nucleocytoplasmic transport
etl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114064975 (UPF3B)
03015 mRNA surveillance pathway
114064975 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114064975 (UPF3B)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114064975 (UPF3B)
mRNA cycle factors
P-body specific factors
114064975 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
114064975
NCBI-ProteinID:
XP_027754315
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MGARGRAALPWPGIGIGIRNGAGMKEDKENARPKERRGAAAGPGAVLGAGPGPTAGTDGR
AGAAELDRLERPKDKKETLSKVVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYP
HMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKT
GTIEDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLR
EEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIK
LLKKPEKDEKDLERKEKSKKLEKETLREEKIASSASAKRSDGETKEEKAKKSEDECVKDY
RDRDRDFDRDREYERAQREKLRRQEEERRRQKERYEKEKVFRRKEEEVKKERDLLREKGK
KSDLTDFTSSTDKSEKVTKDDKKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSA
AKPADQGVDKKQESETSHTKEEE
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgcgggggcgcgcggcgctgccctggcccgggatcgggatcgggatccggaac
ggggccgggatgaaggaggacaaggagaacgccaggcccaaggagcggcgcggggccgcc
gccgggccgggcgctgtgctgggcgcagggccgggccccaccgccggaacggacggcagg
gccggcgcggccgagctcgaccgcctggagcggcccaaggacaagaaggagacgctcagc
aaggtggtgatccggcggctcccgcccagcctgacgaaggagcaactggaggagcacctg
cagccgctgcccgagcacgactacttcgagttcttcgccaacgactccagcctgtacccg
cacatgttctccagagcctacatcaacttcaagaaccaggaagacatagtcctcttcagg
gatcgcttcgacggctatgttttcgtcgatcacaaaggtcaggagtatgctgccatagtt
gagtttgcacctttccaaaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaact
ggaactatcgaagatgacccagaatacaagaagtttctggaaagttacagtgcagatgat
gaaaaattaacctccactcctgaaactttgttggaggaaatagaggcaagaaacaaagag
ctaatagctaaaaagactactccattattgaacttcttgaaaaacaaacagagactgaga
gaagaaaaaagagaggaaaggagaaggagagaattggaaagaaaaagacaaagagaagaa
gagagaagaaaatggaaagaggaggagagaaggaagagaaaagaagcagaaaaattgaag
aaagtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaag
ctacttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagaaa
ctggaaaaagagactctgagggaggaaaaaattgcgagtagtgcatctgccaaacgatct
gatggggagacaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactac
agggaccgagatagagattttgacagagacagagaatatgagagagcgcagagagagaaa
ctgagacgccaagaagaggagcgtcggaggcagaaagagcgctatgagaaagagaaggtt
tttagaagaaaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaag
aaaagtgatcttacagactttaccagcagcacggacaaatctgagaaagtaaccaaagac
gataaaaaagaggatacaattaagagggatcgtatcagaaacaaggatcgcccagccatg
cagctgtaccagccgggagcccgaagccgaagcagattgtgtcagtatgaagacagtgct
gcaaagcccgcagatcagggagtggataagaaacaagagagtgagacaagtcacacgaag
gaagaggagtga
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