Empidonax traillii (willow flycatcher): 114067721
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Entry
114067721 CDS
T05887
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114067721 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etl03041
]
114067721 (DHX38)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114067721 (DHX38)
Spliceosome [BR:
etl03041
]
Complex C
Other components
Step II factors
114067721 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
Microtub_bd
PhoH
SRP54
AAA_16
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
114067721
NCBI-ProteinID:
XP_027759139
LinkDB
All DBs
Position
Unknown
AA seq
1233 aa
AA seq
DB search
MASVSEESLHRLSGTSPGGEAGGLLQRAQGAEQHVFKAPAPRASLLGLDVLAAQKRRERQ
EEAAGGKRSRVASYKDWEEGRDEAGSAEEEDEEEDEDDRSSRKARRNRHYRSVHVETPSY
TGGVSEEFWERSRQRERERREHGVFASSKEEKERKKERSRDRDHDRKRDREERDRSRHSS
RSERDGSSERSSRRSEPESPRHRPKDAATPSRSSWEEDDSGYSSARRSQWESPSPTPSYR
DSERSHRPSSLRDTDRRERDRSVRSRYSDKTPLPTPSYKYNEWADDRKHLGATPRLSRGR
GRRADGEEGITFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKKREQH
LHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDDDFEEDNSAKVHLLVHNLVP
PFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAGTK
LGDIMGIKKEEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEASSEFAKKKSILEQRQYLPI
FAVQQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVA
KRVSEEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDNYSAIIMDEA
HERSLNTDVLFGLLREVVARRSDLKLVVTSATMDAEKFASFFGNVPIFHIPGRTFPVDIL
FSKTPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALA
VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPR
IGMDALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANV
VLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPA
LSKMLIVSCDMGCSSEILLVVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNV
YLQWKNNNYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCIC
AAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVT
AVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQERRN
PLGSARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggtcagcgaggagtcgctgcaccggctgtcggggacgagcccgggcggcgag
gcgggcgggctgctgcagcgggcgcagggcgccgagcagcacgtcttcaaggcgccggcc
ccgcgcgcctccctgctggggctggacgtgctggcggcgcagaagcggcgggagcgccag
gaggaggcggccggggggaagcgatcccgggtcgcatcctacaaggactgggaagagggt
cgtgacgaggcgggcagcgccgaggaggaggacgaggaagaggacgaggacgaccggagc
agccgcaaagctcgcaggaacaggcattaccgctccgtccatgtggagacaccttcatac
acagggggtgtcagcgaggagttctgggagcgcagccggcagcgggagagggagcgtcgg
gaacacggagtctttgcctcctccaaggaggagaaggaacggaagaaggaacgcagtagg
gatcgggaccacgatcgtaaacgggaccgtgaggagcgggacagaagtcgtcacagcagc
agatcagaaagggatggttcatcggaacgaagcagcaggaggagcgaacctgagagccct
cgacatcggcccaaagatgcagccacaccatctcgctccagctgggaggaagatgatagt
ggctacagcagtgcccgtcgctcacagtgggaatctccctcacccacaccttcctaccgg
gactcggagcgcagccaccggccatcgtcactgcgggacacggaccggcgggagcgggac
aggtctgtgaggagcaggtactcggacaagacgccattgcccaccccatcgtacaagtac
aacgagtgggctgacgacaggaagcacctgggggctacgccacggctgtcccgggggaga
ggccggcgcgcggacggggaggagggcatcaccttcgagacggaggaggagcggcagcag
tgggaagatgaccagcggcaagctgaccgggactggtacatgatggatgagggctatgac
gagtttcataaccccttggcctactcctctgaggagtatgtgaagaagcgggagcagcac
ttgcacaagcagaagcagaagcggatctcagcacagcggcgacagatcaatgaggataac
gagcgctgggagacgaatcgcatgctgaccagtggtgtggtccatcggattgaagtggac
gacgattttgaagaggataactctgctaaagttcatttgttggtgcacaacctggtgccc
cctttcctagatggaaggattgtcttcaccaaacagccagagcccgtcatccctgtgaag
gatgccacctcggatttggccatcatagcccggaaaggcagtcagctggtgcgcaagcac
agggagcagaaggagcgtaagagggctcagcacaagcactgggagctggcaggcactaaa
ctgggagacattatggggatcaagaaagaagaggagaaggatgaaatggtgacggaagat
ggcaaagtggattacaagactgagcagaagtttgctgaacacatgaaagaaaaaagtgaa
gccagcagtgagtttgccaagaagaaatcgatcctggagcagagacaatacctgcccatc
tttgctgtgcagcaggaactgctctccatcctcagagacaacagcattgtgattgtggtg
ggggagacagggagtgggaagacgacccagctgacacagtacctgcacgaggacggctac
actgactacggcatgatcggctgcacccagccccgcagagtggccgccatgtcggtggcc
aagcgtgtcagcgaggagatgggggtgcgcctgggggaggaggtgggctatgccatccgt
tttgaggactgcacgtccgagaacacagtgatcaagtacatgacagatgggatcctcctc
cgtgagtcgctgagggaggctgacctggacaactacagtgctatcatcatggatgaggca
cacgagcgctcgctcaacactgatgtgctcttcgggctgcttcgggaggtagtggcccga
cgctcagatctgaaacttgttgtcacctcggccaccatggatgcagaaaagtttgcctcc
ttctttgggaatgttcccattttccacattcctgggcgcactttccctgtggatattctt
ttcagcaagaccccacaggaggattatgtggaggctgcagtgaaacaagccctgcaggtc
cacttgtctggtgctcctggagacatcctcgtcttcatgcctggccaggaggatattgag
gtgacctcagagcaaattgtggagcaccttgaggagctggagaaggcacctgctcttgct
gtactgccaatctattctcagctgccctcggacttgcaggccaagatcttccagaaggct
cccgacggggtcaggaagtgcatcgttgccactaatattgcagagacctcactgacagtg
gatggcatcatgtttgtgattgactctggctactgcaagttgaaggtttttaacccccgc
ataggcatggatgcgctgcagatctaccccatcagtcaggcgaatgccaatcagagggca
ggccgagctggccggacaggcccaggccactgcttcaggctttacactcagagtgcttac
aagaatgagctactgacaaccacggtgcccgagatccagcgcaccaaccttgccaatgta
gtgctcttgctcaagtccttgggtgtgcaggacctgctgcagttccacttcatggatccg
ccccctgaggacaacatgctgaactccatgtaccaactgtggatcctgggggccctggat
aacacaggtggtctgacctcaacaggacgtctcatggtggagttcccactggaccctgca
ctctccaaaatgctcatagtctcctgcgacatgggttgcagctctgagatcttgctcgtt
gtctccatgttgtctgtgcctgccatcttttaccggcctaagggccgagaggaagagagt
gaccaagtgcgggagaaatttgctgttccagagagtgatcacttgacttacctgaatgtt
tacctgcagtggaaaaacaacaactattctaccctgtggtgcaatcagcacttcatccat
gctaaggccatgcggaaggtgcgggaggtgcgtgcccagctcaaggacattatggtgcag
cagcggatgagcctggcgtcctgtggtacagactgggatgttgtcaggaagtgcatctgt
gctgcgtatttccatcaggctgcaaagctgaagggcattggggagtatgtgaacatccgc
acaggcatgccctgccacctgcaccccacgagctctctgtttggcatgggctacacgcca
gactacattgtgtatcacgaattggttatgaccacaaaggaatacatgcagtgtgtcact
gctgtggatggagagtggctggcagagctgggtcccatgttctacagtatcaagcatgct
ggcaagtcacgccaggagaaccgccgccgtgccaaggaggaagtgtctgccatggaggag
gagatggctttggccgaggagcagctgcgtgcccgccgggaggagcaggagcgccgtaac
ccgctgggcagtgcaagatctactaaaatctacacccctgggcggaaggaacagggggag
cccttgacgccacgacgcacccccgcccgctttggcctctga
DBGET
integrated database retrieval system
