Escherichia coli UMNK88 (ETEC, porcine): UMNK88_3924
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Entry
UMNK88_3924 CDS
T02001
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eun
Escherichia coli UMNK88 (ETEC, porcine)
Pathway
eun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UMNK88_3924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eun03019
]
UMNK88_3924
03016 Transfer RNA biogenesis [BR:
eun03016
]
UMNK88_3924
Enzymes [BR:
eun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UMNK88_3924
Messenger RNA biogenesis [BR:
eun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UMNK88_3924
Transfer RNA biogenesis [BR:
eun03016
]
Prokaryotic type
tRNA degradation factors
UMNK88_3924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
DUF2110
aRib
SLS1_KH2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AEE58455
LinkDB
All DBs
Position
complement(3797684..3799819)
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgactctggaaacc
ggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgacaccgcggta
ttcgttaccgttgttggccagaaaaaagccaaaccaggtcaggacttcttcccactgacc
gttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttcttccgtcgt
gaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccgattcgc
ccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtggtttctgtt
aacccgcaagttaacccggatatcgtcgcgatgattggtgcttccgcagcgctgtctctg
tctggtattccgttcaatggcccgattggtgctgcccgcgtaggttacatcaatgaccag
tacgtactgaacccgactcaggacgagctgaaagagagcaaactggatctggttgttgcc
ggtactgaagccgctgtactgatggttgaatctgaagctcaactgctgagcgaagaccag
atgctgggcgcagtagtgttcggtcatgaacaacagcaggttgttattcagaacatcaat
gaactggtgaaagaagccggtaaaccgcgttgggactggcagccggagccggtaaacgaa
gcgctaaacgcgcgcgttgctgcactggctgaagctcgcctgagcgatgcttaccgcatc
accgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaaccatcgcgacg
ctgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctgcacgcgatc
gagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgacggtcgtgaa
aaagatatgatccgtggtctggatgtgcgtactggcgtgctgccgcgtactcacggttct
gcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggtactgctcgt
gacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctgttccactac
aacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtgctggcagtcatgccggatatggacaaa
ttcccgtacaccgtacgtgttgtgtctgaaatcactgaatccaacggttcctcttctatg
gcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccgatcaaagctgcc
gttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgtactgtctgac
attttgggcgacgaagatcacctgggcgatatggacttcaaagttgcaggttcccgcgac
ggtatctctgcactgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgcgctgaaccaggctaaaggtgcgcgtctgcatatcctgggcgtaatggaacaggcg
atcaacgcgccgcgtggcgatatctctgagttcgcaccgcgtatccataccatcaagatc
aacccggacaagatcaaagatgttatcggtaaaggcggttctgtaatccgtgctctgacc
gaagaaactggcaccaccatcgaaatcgaagatgacggtactgtgaagattgcagcgacc
gacggcgagaaagcgaaacatgctattcgtcgtatcgaagagatcactgcagaaatcgaa
gtgggccgcgtctacactggtaaagtgacccgtatcgttgactttggcgcatttgttgcc
atcggcggcggtaaagaaggtctggtccacatctctcaaatcgctgacaaacgcgttgag
aaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagttctggaagttgat
cgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaacctgctgca
gcaccggaagctccggctgctgaacagggcgagtaa
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