Eutrema salsugineum (saltwater cress): EUTSA_v10006845mg
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Entry
EUTSA_v10006845mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10006845mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10006845mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EUTSA_v10006845mg
mRNA degradation factors
5'-3' decay
Decapping complex
EUTSA_v10006845mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
18993231
NCBI-ProteinID:
XP_006416798
UniProt:
V4MTK2
LinkDB
All DBs
Position
Unknown
AA seq
788 aa
AA seq
DB search
MDLKQIGDNSTGNSVFDASQYAFFGNDVVEEVELGGLEDEDDELPVAAIEEDFAFDKEEA
EVSRPFSEVDDLASTFSKLNRDHDGYRNTVPISDNGSRQNYFVDERNHGEELPNWYGQQI
LGSDAIQDDKRWPSQPFSTPNLVEQRNLHRAISYPEPQPQQRPHQHQQQFSSEPILVPNS
SYVSGPPSGGRSPDQHLGQPSTQYHPGGPHLGSPNLSPFPSSHPQLAGMHHGSPQRTGNM
PQFQPSLSLKNHPSAQWMNRQNVYPGDTSGIMNNMLPQQQLPHQNGLMPQQQRMPQMQVP
HNRLLHPMQPHGHLPGMQPQLFNSLLSRSGSSGSYDAMLGFGDLREAIPGSGQGNRQNMR
FHQQGFDGGFQRRDNAWPPFRSKYMTGDEIENILRMQLAATHSNDPYVDDYYHQARLAKK
SAGAKLKHHFCPNHLRDLPSRARTNNEPHAFLQVDALGRVPFSSIRRPRPLLEMEPPNSA
KSGNHEHKETDKPLEQEPMLAARVIIEEGLYLFLEVDDIDRFLEFNQLQDGGNQLRQKRQ
ALLDGFVVSLQLVDPLGKNGKNSGLGSQDDLVFLSIISLRKGRKLLTRYLQLLFPGSDLM
RIVSMAIFRHLRSLFGVRSLDSETMEATIKLAKVVALCIHTMELGPVSACLAAVCCSSEQ
PPLRPLGSPVGDEATIILKSALDRATELLRANNYNNAGMNLWRASFDEFFKLLMKHCISK
YDNIMQNLNSQLSPHFGTEISEAAAQAIVREMPIELLRASFPHISDEQKRILMEFLKLGS
QKTDSVIT
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatcttaagcagattggagataattctactggtaattctgtctttgatgcatctcag
tatgcattttttgggaacgatgttgttgaggaggttgagctgggtggattggaagatgaa
gatgatgaattaccggtggctgcgatagaagaagattttgcctttgataaggaagaggct
gaagtttctagacctttttctgaagttgatgaccttgctagcacattttcaaaattgaat
agggatcatgatggatataggaacacggtaccaatatctgataatggatcaagacagaat
tattttgttgatgagcggaaccatggggaggagttgccaaattggtatgggcagcagata
ctgggctccgatgccatccaagatgacaaaaggtggccatcacagcctttttctactcca
aatcttgttgagcaaagaaacctgcacagagcaatatcatatcctgaaccacagcctcag
cagcgcccacaccagcatcagcaacaattttccagcgaaccgattcttgtgccaaactca
tcttatgtttctggccctccttcaggcggcagatcgccagatcagcatttaggacaacca
agtacacaatatcaccctggtgggcctcatttgggatcgccaaatctctccccttttcca
agttctcatcctcagttggctgggatgcatcatggatcaccgcagcgcactggaaacatg
cctcagtttcaaccttctctttctttgaaaaatcacccatctgctcaatggatgaatcgt
caaaatgtgtatcctggggatacttctgggatcatgaacaacatgttgccacaacagcag
ttacctcatcaaaacggtttgatgcctcagcagcagagaatgcctcagatgcaggttcct
cataacaggttactacatccgatgcagcctcacgggcatttgccaggcatgcagcctcag
ttatttaattccctcctctctcgatctgggtcctcaggcagttatgatgcaatgcttggg
tttggtgatctgagggaagcaataccaggatcaggtcaggggaacagacaaaacatgcgg
tttcatcaacagggttttgatggtgggtttcaaaggagagataatgcatggcctcctttc
cgttcgaaatatatgacaggtgatgaaatagaaaacatcctaagaatgcagcttgcagct
acacatagcaatgatccttatgtagatgattactaccaccaggcccgtcttgctaagaaa
tctgctggtgcaaaactgaagcatcatttctgtccgaatcatttgagagaccttccatct
cgtgcacgtactaacaacgagccccatgcatttcttcaggttgatgctcttggtagagtt
cctttctcttcgatccgcaggcctcgtcctctgcttgaaatggaacctccaaattcagct
aaatctggtaatcatgagcataaagagacagacaagccccttgaacaagaaccaatgctt
gcagctagggtgattattgaagaaggtctctacctcttcctcgaagtagatgatattgac
cggtttttagagttcaatcaactccaagatggtggaaaccagttgaggcaaaagcggcaa
gctctgttggatggatttgtagtgtcactgcagcttgttgacccactcggtaagaacggg
aaaaacagtggactcggttctcaggatgatctcgtatttctaagcattatctcccttcga
aagggtcggaagctacttacaaggtacctacagcttcttttcccgggcagcgatctaatg
cgaatagtttccatggccattttcagacacttaaggtccttgttcggagtgagatcatta
gatagcgaaaccatggaagccacgatcaaacttgcaaaagttgtcgctttatgcattcac
accatggaacttggccccgtaagtgcgtgtctagcagcagtttgttgttcttctgagcag
ccaccgcttcgtcctttgggtagtcccgttggagacgaagctaccatcatactaaaatct
gcacttgatagagctaccgaacttctccgtgcaaataattacaacaatgcaggcatgaat
ctgtggcgtgcttcctttgatgagttcttcaaattactgatgaagcactgcataagcaag
tacgataatataatgcagaacttgaattcgcaattgtcaccgcactttggcacagagata
tctgaagctgcagcacaagccattgtcagggaaatgcctattgagcttctacgcgcaagt
ttcccgcacatcagcgatgagcagaagagaatacttatggaattcttgaagctcggtagc
cagaaaactgattcagtcataacttga
DBGET
integrated database retrieval system