KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10006845mg
Entry
EUTSA_v10006845mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10006845mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10006845mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EUTSA_v10006845mg
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     EUTSA_v10006845mg
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 18993231
NCBI-ProteinID: XP_006416798
UniProt: V4MTK2
LinkDB
Position
Unknown
AA seq 788 aa
MDLKQIGDNSTGNSVFDASQYAFFGNDVVEEVELGGLEDEDDELPVAAIEEDFAFDKEEA
EVSRPFSEVDDLASTFSKLNRDHDGYRNTVPISDNGSRQNYFVDERNHGEELPNWYGQQI
LGSDAIQDDKRWPSQPFSTPNLVEQRNLHRAISYPEPQPQQRPHQHQQQFSSEPILVPNS
SYVSGPPSGGRSPDQHLGQPSTQYHPGGPHLGSPNLSPFPSSHPQLAGMHHGSPQRTGNM
PQFQPSLSLKNHPSAQWMNRQNVYPGDTSGIMNNMLPQQQLPHQNGLMPQQQRMPQMQVP
HNRLLHPMQPHGHLPGMQPQLFNSLLSRSGSSGSYDAMLGFGDLREAIPGSGQGNRQNMR
FHQQGFDGGFQRRDNAWPPFRSKYMTGDEIENILRMQLAATHSNDPYVDDYYHQARLAKK
SAGAKLKHHFCPNHLRDLPSRARTNNEPHAFLQVDALGRVPFSSIRRPRPLLEMEPPNSA
KSGNHEHKETDKPLEQEPMLAARVIIEEGLYLFLEVDDIDRFLEFNQLQDGGNQLRQKRQ
ALLDGFVVSLQLVDPLGKNGKNSGLGSQDDLVFLSIISLRKGRKLLTRYLQLLFPGSDLM
RIVSMAIFRHLRSLFGVRSLDSETMEATIKLAKVVALCIHTMELGPVSACLAAVCCSSEQ
PPLRPLGSPVGDEATIILKSALDRATELLRANNYNNAGMNLWRASFDEFFKLLMKHCISK
YDNIMQNLNSQLSPHFGTEISEAAAQAIVREMPIELLRASFPHISDEQKRILMEFLKLGS
QKTDSVIT
NT seq 2367 nt   +upstreamnt  +downstreamnt
atggatcttaagcagattggagataattctactggtaattctgtctttgatgcatctcag
tatgcattttttgggaacgatgttgttgaggaggttgagctgggtggattggaagatgaa
gatgatgaattaccggtggctgcgatagaagaagattttgcctttgataaggaagaggct
gaagtttctagacctttttctgaagttgatgaccttgctagcacattttcaaaattgaat
agggatcatgatggatataggaacacggtaccaatatctgataatggatcaagacagaat
tattttgttgatgagcggaaccatggggaggagttgccaaattggtatgggcagcagata
ctgggctccgatgccatccaagatgacaaaaggtggccatcacagcctttttctactcca
aatcttgttgagcaaagaaacctgcacagagcaatatcatatcctgaaccacagcctcag
cagcgcccacaccagcatcagcaacaattttccagcgaaccgattcttgtgccaaactca
tcttatgtttctggccctccttcaggcggcagatcgccagatcagcatttaggacaacca
agtacacaatatcaccctggtgggcctcatttgggatcgccaaatctctccccttttcca
agttctcatcctcagttggctgggatgcatcatggatcaccgcagcgcactggaaacatg
cctcagtttcaaccttctctttctttgaaaaatcacccatctgctcaatggatgaatcgt
caaaatgtgtatcctggggatacttctgggatcatgaacaacatgttgccacaacagcag
ttacctcatcaaaacggtttgatgcctcagcagcagagaatgcctcagatgcaggttcct
cataacaggttactacatccgatgcagcctcacgggcatttgccaggcatgcagcctcag
ttatttaattccctcctctctcgatctgggtcctcaggcagttatgatgcaatgcttggg
tttggtgatctgagggaagcaataccaggatcaggtcaggggaacagacaaaacatgcgg
tttcatcaacagggttttgatggtgggtttcaaaggagagataatgcatggcctcctttc
cgttcgaaatatatgacaggtgatgaaatagaaaacatcctaagaatgcagcttgcagct
acacatagcaatgatccttatgtagatgattactaccaccaggcccgtcttgctaagaaa
tctgctggtgcaaaactgaagcatcatttctgtccgaatcatttgagagaccttccatct
cgtgcacgtactaacaacgagccccatgcatttcttcaggttgatgctcttggtagagtt
cctttctcttcgatccgcaggcctcgtcctctgcttgaaatggaacctccaaattcagct
aaatctggtaatcatgagcataaagagacagacaagccccttgaacaagaaccaatgctt
gcagctagggtgattattgaagaaggtctctacctcttcctcgaagtagatgatattgac
cggtttttagagttcaatcaactccaagatggtggaaaccagttgaggcaaaagcggcaa
gctctgttggatggatttgtagtgtcactgcagcttgttgacccactcggtaagaacggg
aaaaacagtggactcggttctcaggatgatctcgtatttctaagcattatctcccttcga
aagggtcggaagctacttacaaggtacctacagcttcttttcccgggcagcgatctaatg
cgaatagtttccatggccattttcagacacttaaggtccttgttcggagtgagatcatta
gatagcgaaaccatggaagccacgatcaaacttgcaaaagttgtcgctttatgcattcac
accatggaacttggccccgtaagtgcgtgtctagcagcagtttgttgttcttctgagcag
ccaccgcttcgtcctttgggtagtcccgttggagacgaagctaccatcatactaaaatct
gcacttgatagagctaccgaacttctccgtgcaaataattacaacaatgcaggcatgaat
ctgtggcgtgcttcctttgatgagttcttcaaattactgatgaagcactgcataagcaag
tacgataatataatgcagaacttgaattcgcaattgtcaccgcactttggcacagagata
tctgaagctgcagcacaagccattgtcagggaaatgcctattgagcttctacgcgcaagt
ttcccgcacatcagcgatgagcagaagagaatacttatggaattcttgaagctcggtagc
cagaaaactgattcagtcataacttga

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