Eutrema salsugineum (saltwater cress): EUTSA_v10016159mg
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Entry
EUTSA_v10016159mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03013
Nucleocytoplasmic transport
eus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EUTSA_v10016159mg
03015 mRNA surveillance pathway
EUTSA_v10016159mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10016159mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
EUTSA_v10016159mg
mRNA cycle factors
P-body specific factors
EUTSA_v10016159mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Fic-like_C
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
18027267
NCBI-ProteinID:
XP_006411151
UniProt:
V4M8G6
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MDHQEEETHSEKQNDEETLARLEEIKKSVEAKMALRQTNLNPERPDSAYLRTLDSSIKRN
TAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQ
RYKEFSPSLTQGLLKVFLPGKPADEDADRNSKAMKKRSTLKLLLELYYVGVIEDSSIFIN
IIKDLTSAEHMKDRDTTQTNLTLLASFARQGRVFLGLPISGQDEDFFKGLDVTAEQKKNF
RKAFNTYYDTLADVLQSEHKSLQQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHLYRN
ISSLAESLDMQPPVMPEDGTTRLTAGDEASSSGAVKDTSVPEPIWDDEDTKTFYECLPDL
RAFVPAVLLGEAEPKSNEQSAKAKDKSSESSSEVVESQQTTEDTTDVPADSGNMADGSNI
EQPQEKEEVDKEKAKDAKKEKGKEKDSDKKLEHEKEKGKSLDVANFERLLQRLPGCVSRD
LIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLATCMKDIPSTLVQM
LEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPSGLVFSCLKACLDEFTHHNIDVA
CNLLETCGRFLYRSPETALRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSAR
ISKVRPPLHQYIRKLLFSDLDKDSITNVLKQLRKLPWSECEQYILKCFMKVHKGKYGQIH
LIASLTSGLSRHHDEFAVAVVDEVLEEIRVGLELNEYGAQQKRLAHLRFLGELYNYEHVD
SSVIFETLYLTLLYGHDTSEQEVLDPPEEFFRVRMVIILLETCGHYFDRGSSKKRLDQFL
INFQRYVLSKGPLPLDIEFDLQDLFANLRPNMTRYATIDEVNAAILQLEEREHASSADKV
SVERHSNTKPPSRSSSNVSLSNGKSTAKDIGENGEAHKEESDSDSGSGSVVRDGQNEELD
DGNHDRGSESDDGDDYDDGVGGPGSDDDNEFRVRQKVVTVDPEEQADFDQELKALLQESI
EQRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVIGDNGEEVLDEENGERREVQVKVLV
KRGNKQQTKQMLIPSDCSLVQSTKQKEAADLEEKQDIKRLVLEYNERDEEEAHGLGTQIL
NWTPGGSRGTTRSYTGEASGKGGGSRHRFVYHQGGGGSYHTRRK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggatcatcaagaagaggaaacccacagcgagaaacaaaacgacgaggaaactcttgct
cgccttgaggagattaagaagtcagttgaagctaaaatggctcttcgtcaaactaacctc
aatcctgaacgtcctgattcagcatatcttaggactctggattctagtattaaacgcaat
acagcagttatcaagaagttaaagcagatcaatgaagagcagcgagaagggctgatggat
gatctgcgaggtgtgaaccttagtaaattcgttagtgaagcagtcactgccatttgtgag
gccaagctcaaaagctcagacatacaagcagctgttcagatatgctcactacttcatcag
agatataaagaattttctcccagtctaacacaagggctcttgaaagtcttccttcctgga
aaacctgccgacgaggatgcagacagaaactcaaaggccatgaaaaagcgcagtacccta
aaacttcttctggagctctactatgttggagtaatagaagatagtagcatcttcatcaat
atcattaaggaccttaccagtgctgaacatatgaaagacagagatactacccaaacaaat
ttgacacttcttgccagttttgctcggcaaggaagagtttttcttgggcttcctatttct
gggcaagacgaagatttttttaagggcctcgacgtcactgcagaacagaagaagaatttt
aggaaagctttcaacacatactatgatactctggcagatgtacttcagtctgagcacaag
tcacttcaacaaatggagaaagaaaatgcaaagctggtaaatgctaaaggggaacttagt
gaagacagtgcatcttcatatgaaaagctgaggaaatcatatgaccatctctatcgaaat
atctcatctttggccgaatctcttgatatgcagcctcctgttatgccagaggatggtaca
actaggctcacagcaggggacgaagcctcatcctctggtgctgtaaaagatacatctgtc
cccgaaccaatttgggacgacgaagataccaagacattttatgagtgcttgcctgatcta
agggcatttgttccagcagtcttgttgggagaagccgagcctaaatcaaatgagcaatct
gcaaaggcaaaagataaatcatcagagtctagctctgaagttgtcgaaagtcaacaaaca
accgaagatacaacggatgttcctgctgattctggtaatatggctgatggatcaaatatt
gagcagccgcaagagaaggaagaagtagataaggaaaaggctaaggatgctaagaaggaa
aaagggaaagaaaaggatagtgacaagaaattggaacatgagaaggagaaaggtaagagc
cttgacgtggcaaacttcgaaagattgttacagcggcttcctggctgcgtaagccgtgat
cttattgaccagctaacggtcgaatactgttatttgaattccaagacaaacagaaaaaaa
cttgtcaaggcgttatttaatgtccctaggacatctctagagttgctagcatactattcg
cgtatggttgcaacactagcaacgtgcatgaaggacatcccttctacgctggtgcagatg
ttggaggatgagttcaattctctggtccataaaaaggaccaaatgaatatcgaaacaaaa
atccggaacatcagatttataggagaactctgcaagtttaaaattgtaccttctggtctt
gtattcagttgtttgaaggcctgcttagatgaatttactcatcataacattgatgttgct
tgcaatcttctggagacatgtggccgtttcctttatcggtctcccgaaaccgcacttagg
atgactaatatgctggacatattgatgcgcctgaaaaatgtcaagaacctagatcctcgt
caaagcactctcgtggaaaatgcctactacctttgtaaaccacctgaaagatcggcacga
atatctaaagttcgcccaccattgcatcagtatattcggaaattgctattttcagatctt
gataaagattccattacgaatgtactgaagcaactgcggaagctgccatggagtgaatgt
gagcaatacatcttaaagtgctttatgaaagttcacaagggaaaatatggtcagattcac
ttaattgcttcactgacttctggtttgagccgccatcatgatgagtttgccgttgctgtt
gttgatgaggtactggaggagataagggttgggcttgagttgaatgaatacggggcacaa
cagaagcgactcgcccatttgagattcttaggggagctgtacaactacgagcacgtagat
tcatctgtgatattcgagacactttatttaactcttttatatggtcatgatacttcagag
caagaggtgctggatccaccagaagaatttttccgcgtcagaatggttatcattcttcta
gaaacctgtgggcactactttgatcgaggttcttcaaagaaaaggcttgatcagtttttg
ataaatttccagagatacgtactgagcaagggtcctcttccactggatattgaatttgac
ttgcaggatttatttgccaatttgagacccaatatgacccgttacgcgactattgatgaa
gtaaatgcagctatactccagctggaagagcgtgaacatgcttcttcagcagacaaagtc
agtgtagaaagacattcaaatacaaagcctccaagcaggtcatcttccaatgttagcctt
tctaacggtaaaagtactgcaaaagatattggagagaatggtgaagctcacaaagaagaa
agcgacagtgattctggtagtggctctgtggtccgagatggacagaacgaagagttggat
gatggaaatcatgaccggggatctgagagtgacgatggggatgactatgatgatggcgtt
ggaggacctggatccgatgatgataatgaatttcgcgtaaggcagaaggtggtaaccgta
gatcctgaggagcaagcggactttgatcaagaactgaaggctttacttcaggagagcata
gagcaaaggaagctagaattacgtggcagaccggcattgaacatgacaataccgatgagt
gtttttgaaggatctggaaaagatcaccatcactttgggcgggttataggtgataacggg
gaggaagtgttggatgaagagaatggggagcgaagagaagttcaagtgaaggtcctagtg
aaaagaggaaacaaacaacaaacaaaacaaatgctaatcccgagtgattgttcgctagtg
cagagcacaaaacagaaagaagctgcggatttggaagagaaacaagatataaagaggtta
gtacttgagtacaatgagagagacgaagaggaagctcatgggttagggacacagatattg
aactggacacctggaggaagcagaggaaccactcgtagttacacaggtgaagcaagtggg
aagggtggtggatcccgtcaccggtttgtttatcatcaaggaggtggtggttcttatcat
actcggagaaagtaa
DBGET
integrated database retrieval system
