Euzebya pacifica: DVS28_a1228
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Entry
DVS28_a1228 CDS
T05999
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
euz
Euzebya pacifica
Pathway
euz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
euz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DVS28_a1228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
euz03400
]
DVS28_a1228
Enzymes [BR:
euz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DVS28_a1228
DNA repair and recombination proteins [BR:
euz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DVS28_a1228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AXV05928
UniProt:
A0A346XUN1
LinkDB
All DBs
Position
complement(1464667..1467282)
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AA seq
871 aa
AA seq
DB search
MVTTIDFPQALPVTQTGKTSWRLDVDGVSQKVTNLTKPYWGPEGYTKGDLLAYYFNAAPW
ILPFLADRALTLKRMPDGADGDFFYAKNAPGHVPDWMPRAPVVSDGDGTSGTGKVIEYLM
AQDTASLVYVANLGCIEMHPWHSRVDMLGHPDYAFFDLDPMEVGFDVVKQVAGLIRVVLE
QLGLTGYPRTSGATGIHIYVPIDRVHTFAEVRELITRLCRLVNRADPERTTMEWQISDRT
GKVFLDAGMNTEGRNIAAAYSVRPHRGAPVSMPLRWEELTTDVEPQDFTIANVWPRLEEV
GDEFTAVLAGGQTLWSAMEAVGLSVDADRRGPSHSLRKDAATAADNGTIGAEPAHARVGP
RSRRQPPGPADPPATPDGPDDHPDPGELSTYTSMRDFAVTNEPAGEAPRPGDDSRFVIQH
HLATRLHHDLRLERGGTLRSWALPKGLPLVPELPHLAMQTEDHPLEYLTFHGDIPEGEYG
GGAMRIWDTGTYETVEWEDGKVTFRLTGHRHRGEWHLFRVGRGEKGKREWLVTRAKSDLI
ELPDPPPVIAPCLATGGGTPFDDDDWLFEVKWDGVRAVATVQRPGAGTKDNNDGITRLVS
RNGNDISPAYPELSGLWERVLAFNAVLDGEVVALGPDGRPSFGLLQQRMHLRGRDRVDRA
RRATPVHFMVFDLLALDGQSLVAMPLEDRLALLDDVLVPSRTIVRSDVIPGRGTALYAAA
EAQGLEGVVAKRRTSRYLPGRRSPDWLKVKVRRTAEVVVAGWVPSSTGAGDLGSLVVAAH
DDDGLRYMGRVGTGFDAAERTRLKDLLDQRPRVDSPLADDGGDAETRWTDPIHVAEVEYG
EVTGEGRLRAPSYRRLVDDADPASVTRAAVR
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
gtggtcaccaccatcgacttcccccaagccctgccggtcacccagaccgggaagacgtcg
tggcggctggacgtcgacggggtcagccagaaggtcaccaacctcaccaagccctactgg
gggccggaggggtacaccaagggcgacctgctggcctactacttcaacgccgccccgtgg
atcctgccgttcctcgccgaccgggcgctgaccctcaagcggatgcccgacggggcagac
ggcgacttcttctacgccaagaacgcccccgggcacgtgcccgactggatgccccgcgcc
cccgtcgtcagcgacggcgacgggacgagcggcacgggcaaggtcatcgagtacctgatg
gcccaggacaccgccagcctggtgtacgtcgccaacctcggctgcatcgagatgcacccg
tggcactcccgcgtcgacatgctcggccatcccgactacgccttcttcgacctcgacccg
atggaggtcggcttcgacgtcgtcaagcaggtcgccgggctgatccgcgtggtcctcgag
cagctcggactgaccggctacccacgcacgtccggcgcgaccggcatccacatctacgtg
ccgatcgatcgggtccacacgttcgccgaggtacgggagctgatcacccggctgtgccgg
ctggtcaaccgggccgaccccgagcgcacgacgatggagtggcagatcagcgaccgcacg
gggaaggtcttcctcgacgccggcatgaacaccgaggggcgcaacatcgcggcggcctac
tccgtccgtccccatcgcggggcgccggtgtcgatgccgctgcgctgggaggagctgacc
accgacgtcgagccgcaggacttcacgatcgccaacgtctggccccggctggaggaggtg
ggcgacgagttcaccgcggtgctcgcgggcgggcagaccctctggtcggccatggaggcc
gtggggctcagcgtcgacgccgaccgccgaggcccctcccactccctccgcaaggacgcc
gccaccgccgcagacaacggcacgatcggggccgaacccgcccatgcgcgagttgggccc
cgatcgcgccggcagccacccggcccggccgaccctccagccaccccggacggccccgac
gaccaccccgaccccggtgagctgtcgacctacacctcgatgcgggacttcgccgtcacc
aacgaacccgccggcgaggccccccggccgggcgacgactcgcggttcgtcatccagcac
cacctggccacccggctgcaccacgacctgcggctggaacggggcggcacgctgcgcagc
tgggcgctgcccaaggggctgccgctcgtgcccgagctgccgcacctcgccatgcagacc
gaggaccacccgctggagtacctgaccttccacggcgacatccccgagggtgagtacggc
ggtggggccatgcggatctgggacaccggcacctacgagaccgtcgagtgggaggacggc
aaggtcaccttccgcctgaccggccaccgccaccggggcgaatggcacctcttccgggtg
gggcggggcgagaagggcaagcgggagtggctggtcacccgcgccaagtccgacctgatc
gagctgcccgaccctccacccgtcatcgccccctgtcttgccaccggcgggggaaccccc
ttcgacgacgacgactggctgttcgaggtcaagtgggacggggtccgggccgtcgcgacg
gtccagcggccgggcgccggaaccaaggacaacaacgacgggatcacccggctggtcagc
cgcaacggcaacgacatctcccccgcgtatccggagctgtcgggcctgtgggaacgggtg
ctggcgttcaacgcggtcctcgacggcgaggtggtggccctgggtcccgacggccggccc
tccttcggcctgctccagcagcgcatgcacctgcggggccgtgaccgggtcgaccgagcc
cgccgggccacgccggtgcacttcatggtcttcgacctcctggccctggacggtcagtcg
ctcgtggcgatgccgttggaggatcggctggcgctgctcgacgacgtgctcgtcccgagc
cggacgatcgtgcgcagcgacgtgatccccggccggggaacggcgctgtacgccgctgcc
gaggcccagggcctcgaaggggtcgtggccaagcgacgcacgtcgcgatacctgccgggg
cgtcgctcgcccgactggctgaaggtcaaggttcgtcgcaccgccgaggtggtcgtcgcg
gggtgggtgccctcctccaccggcgcaggcgacctcggcagcttggtcgtggccgctcac
gacgacgacggcctgcgctacatgggacgggtcggcactggtttcgacgcggccgaacgg
acccgcctcaaggacctcctcgaccagcgtccacgcgtcgacagcccgcttgccgacgat
ggcggcgatgccgagacacgctggaccgacccgatccacgtggccgaggtcgagtacggc
gaggtcaccggcgagggccgcctgcgcgccccctcctaccgtcggctggtcgacgacgcc
gacccggcgtcggtgacccgggccgccgtacgctga
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