Euzebya pacifica: DVS28_a3955
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Entry
DVS28_a3955 CDS
T05999
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
euz
Euzebya pacifica
Pathway
euz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
euz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVS28_a3955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
euz03400
]
DVS28_a3955
Enzymes [BR:
euz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVS28_a3955
DNA repair and recombination proteins [BR:
euz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVS28_a3955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXV08626
UniProt:
A0A346Y2C9
LinkDB
All DBs
Position
complement(4537065..4540616)
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AA seq
1183 aa
AA seq
DB search
MSAAPLPATDVRGPLASLLSRAGEDFDDLAFTSEATVSPPLRPYVIAHLAKRRPLLVVTP
TTKDAEALVDDIGAFAGTDAVALFPSWETLPHERLSPQPATVGQRLRVLDQLRRDALRIV
VAPVRAVLQPMDPRLAERVPLTISAGWDGGPTVLVDQLATLGYTRSSLVTQRGEFASRGG
IVDVFPTTGDHPVRIEFWGDDVDGLREFAIADQRALETVEEVVIHAARELVLDAETAGTA
RKMAEQVPALADQLNMLADGVAFEGVEGLVTAIHPTPAHLPDLMPERTGLVIVDPTQSHD
RAAQLVDQAAELMITDWEQLAAAAGTDGRAAVDAAHERNERAGFADLDEVVEGYERGGTG
KVWRLTPFTTADSFVKLTARPWDTFKGDVVSAAQTVKRYLAGTDDRDPMTVVLTTAGHGP
ALRLAEVLRAEGVPVDVPKRPDDPDVDPLSLVPNSPDGRAHIVECDLRTGFLSEREGICL
LGEFDLFGPRRTRAGRRLPSRRAAQQAVLDLEEGDPVVHSVHGVGRYVGMVTRELRGTTT
LGGGSAGKITRDYVIVEYAGADRLFVPSDQVDTLAKYVGGEDPKVMRMGGADWDRARGKV
KAAVEEMASELIRLYQARMHSPGHAFSPDSTWQTELEQAFPYPETPDQMEAIEAVKEDME
SPVPMDRLVCGDVGFGKTEVAVRAAAKAVFDHKQCAVLVPTTLLAQQHGETFTERFSGFP
VNIAVLSRFASQKEQKEILDGLAAGTVDLVIGTHRLLSKDIEFKDLGLLIVDEEQRFGVT
HKERLKQMKTSVDVLTMSATPIPRTMEMAITGIRDLSTIETAPEERQPIVTQVGPMDENL
AALAVRREMLREGQVFWLHNSVRTIHAAAERIRELVPGVRVGIGHGQMGESELEQVMLDF
WHREFDVLVATTIIESGLDIPNANTLIVERADLFGLAQLYQLRGRVGRSRARGYAYLFHP
ADASLTEEAYKRLESIATHTQLGSGMSIALKDLEIRGAGSMLGADQSGSVATVGFEAYSQ
LMAEAVTELTQGKPTEREPEVKVDLPIDAHIPKDYIADEGLRLEAYRTIASVRDARGVKN
ARAELKDRYGPLPDPVDRLLTVAALKAALRRWGVTEISTTPRRTVRIHPVKLTESQQVRL
QRTDRNALHNPAAELVELRMPAKGSVDLIGWLAKRLKDLFASK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgccccgctgcccgccaccgatgtgcgcggcccccttgcctccctgctctcg
cgcgcgggggaggacttcgacgacctcgccttcaccagcgaggccaccgtcagtcccccg
ctgcgaccctacgtcatcgcccacctcgccaagcggcgtccgctgctggtcgtcaccccc
accaccaaggacgccgaggcgctcgtcgacgacatcggcgccttcgccggcaccgacgcc
gtcgccctgttcccctcctgggagacgctgccccacgagcgcctctcgccccagcccgcc
acggtcggccagcgcctgcgggtcctcgaccagctgcgtcgcgacgcgctccgcatcgtc
gtcgcccccgtccgtgcggtcctgcagcccatggacccccggctggccgaacgggtaccg
ctgacgatctccgccggctgggacggtgggcccaccgtgctggtcgaccagctcgccacc
ctcggctacacccgttcctcgctggtcacccagcgcggtgagttcgcctcgcgtggtggg
atcgtcgacgtcttcccgaccaccggtgaccaccccgtccgcatcgagttctggggcgac
gacgtcgacggcctgcgcgagttcgccatcgccgaccagcgtgccctggagacggtggag
gaggtggtcatacacgcggcccgcgagctggtgctggatgccgagaccgccggcaccgcc
cgcaagatggccgagcaggtcccggcgcttgcggaccagctgaacatgctggccgatggc
gttgccttcgagggcgtggaggggctggtcaccgccatccaccccaccccggcgcacctg
cctgacctgatgcccgaacgcaccgggctggtcatcgtcgaccccacccagtcccacgac
cgcgccgcccagctggtcgaccaggccgccgagctgatgatcaccgactgggagcagctg
gcggctgccgccggcaccgacgggcgggctgccgtcgacgccgcccacgaacgcaacgag
cgtgccgggttcgccgacctcgacgaggtcgtggagggctacgagcggggtggcaccggc
aaggtctggcggctgaccccgttcacgacggccgactccttcgtcaagctgaccgcccgc
ccgtgggacaccttcaagggcgatgtcgtcagcgccgcccagaccgtcaagcggtacctc
gccggcaccgacgaccgtgacccgatgacggtggtgctgaccaccgccggccacggccct
gccctgcgcctcgcagaggtcctgcgcgccgagggcgtccccgtcgacgtgcccaagcgg
cccgacgatcccgacgtcgaccccctctccctcgtcccgaacagccccgacggccgggct
cacatcgtcgagtgcgacctgcggaccggcttcctcagcgaacgcgagggcatctgcctg
ctcggcgagttcgacctgttcggaccccggcgcacccgcgccggccgccggctgccgagc
cgccgggccgcccagcaggcagtcctcgacctggaggagggcgacccagtcgtccacagc
gtgcacggcgtcggccgctacgtcggcatggtcacccgcgagctgcgcgggaccacgacc
ctcggtggcggcagcgccggcaagatcacccgcgactacgtcatcgtggagtacgccggt
gccgaccggctgttcgtgccctccgaccaggtcgacaccctcgccaagtacgtcggcggc
gaggaccccaaggtcatgcggatgggcggggccgactgggaccgcgcccggggcaaggtc
aaggccgccgtcgaggagatggccagcgagctgatccgcctgtaccaggcgcggatgcac
tcgcccggccatgccttcagccccgactcgacgtggcagaccgagctcgagcaggccttc
ccgtaccccgagacccccgaccagatggaggccatcgaggcggtcaaggaggacatggag
tccccggtccccatggaccgcctggtctgcggtgacgtcgggttcggcaagaccgaggtg
gccgtgcgcgccgccgccaaggccgtgttcgaccacaagcagtgcgcggtcctggtgccg
accacgctgctggcccagcagcacggggagaccttcaccgaacggttcagcgggttcccc
gtcaacatcgcggtgctcagccggttcgccagccagaaggagcagaaggagatcctcgac
gggctcgccgccggcaccgtcgacctggtcatcgggacccaccgcctgctgagcaaggac
atcgagttcaaggacctcggcctgctgatcgtcgacgaggagcagcgattcggcgtcacc
cacaaggagcgcctcaagcagatgaagacctcggtggacgtgctgaccatgtcggccacc
ccgatcccgcggaccatggagatggcgatcacgggcatccgtgacctgtccaccatcgag
accgcccccgaggaacggcagccgatcgtcacccaggtcggcccgatggacgagaacctg
gccgcgctcgccgtccgccgggagatgctgcgcgagggacaggtcttctggctgcacaac
tccgttcggaccatccacgcggccgccgagcgcatcagggagctggtccccggcgtgcgc
gtcgggatcggccacgggcagatgggtgagtccgagctcgagcaggtgatgctggacttc
tggcatcgcgagttcgacgtcctcgtcgccacgaccatcatcgagtcggggctggacatc
cccaacgccaacaccctgatcgtcgaacgtgccgacctgttcggcctggcgcagctgtac
cagctgcgcggccgtgtcggacggtcccgcgcccgcggctacgcctacctgttccacccc
gccgacgcgtcgttgaccgaggaggcctacaagcggctggagtccatcgccacccacacc
cagctggggtcgggcatgtcgatcgcgctcaaggacctcgagatccgcggtgccggctcg
atgctgggtgccgaccagtccggctcggtggccaccgtcggcttcgaggcctacagccag
ctgatggccgaggccgtcaccgagctgacccagggcaagccgaccgagcgcgaacccgag
gtcaaggtcgacctgcccatcgacgcccacatccccaaggactacatcgccgacgagggg
ctgcggctggaggcctaccggaccatcgccagcgtccgcgacgcccgcggcgtcaagaac
gccagggccgagctcaaggaccgctacggcccgctgcccgacccggtggaccgcctgctg
accgtggcagcgctcaaggcggccctgcggcgatggggtgtgaccgagatctccacgacg
ccacggcgaacggtgcggatccacccggtcaagctgacggaatcccagcaggtccggctg
caacggaccgaccgcaacgccctgcacaaccccgcggcggagctcgtcgagctgcgcatg
ccggccaagggatcggtcgacctgatcgggtggctggccaagcggctcaaggacctgttc
gcgagcaagtag
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