Epilithonimonas vandammei: EIB75_06135
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Entry
EIB75_06135 CDS
T06885
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eva
Epilithonimonas vandammei
Pathway
eva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EIB75_06135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eva03400
]
EIB75_06135 (ligD)
Enzymes [BR:
eva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EIB75_06135 (ligD)
DNA repair and recombination proteins [BR:
eva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EIB75_06135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AZI54849
UniProt:
A0A3G8ZBP2
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All DBs
Position
1297654..1299516
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AA seq
620 aa
AA seq
DB search
MLCKVSDKAFDDKDWAFEIKWDGYRAIADMSKDELRLYSRNGIDFSQKFKKITHSLNLQE
HPMILDGEIVAYDDKGKPNFQWLQRIGDHPNLALTFQVFDLLWLNGHSTENLSYLQRKEL
LKDALIENEIIKYSDHILEKGKDFFQAAKDMGLEGIVAKKTDSLYKENLRSSEWLKIKIH
KSDEAVICGFTEPKGSRKKFGALILGKYLNGEMVFCGHTGGGFNDKSLSDIYDKMQPLIT
KNSVFKITPKTNTKATWIKPELVAEIKFSELTEDNIYRHPIFLRLRDDIDSKDVKFNSEN
SSKNENMKKIEPKKRMGKDDVLKKIGKQELKLTNQNKIYFPEDDITKGDVIDFYQSISKY
ILPHLKDRPQSMNRYPNGIKGLSFFQKDAAEETPEWIETQKVFSESSDKYINYIICNDKE
TLAYLNNLGCIELNIWTSKIKKADNPDYLVLDLDPSEKNSFEDVIETAQAVKEVLDLAGV
GGYPKTSGSSGIHVYIPMNAKYSYDQVKNFGHLLMQMVQKKLPDLTTLERSLQKRDKNKI
YLDYLQNRRGQTLASVYSLRPKNGVPVSMPLEWKEVKNGLKPTDFNIHNSLDRLKEKGDI
FKPILGKGIDMLKAIKKLEE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgctttgcaaagtctctgataaagcatttgatgacaaagattgggcatttgagatcaaa
tgggatggttatcgtgccattgcagatatgagcaaagatgaactccgattatattcccga
aacggtatcgatttttctcagaaattcaaaaaaataacccattcacttaatttacaggaa
catccaatgattcttgatggtgagattgtcgcttatgacgataaaggaaagcctaatttc
caatggcttcaaaggattggtgatcatccgaatcttgcattgacctttcaggttttcgat
ctgttatggctcaatggtcattcgacagaaaatttatcttatctacagagaaaggaattg
ttaaaagatgccttgatagaaaatgagattatcaagtatagtgaccatattttagaaaaa
ggcaaagatttttttcaagcagcaaaagatatgggattagaaggaattgtagcaaaaaaa
acagacagcctgtacaaagaaaatctccgtagctccgaatggctgaaaatcaaaatccac
aagagtgatgaagcggtcatctgtggttttacagaaccaaaaggctcaaggaaaaaattt
ggtgcattgatactggggaaatatctcaatggtgaaatggttttctgcggtcataccgga
ggcggttttaatgataaatcactttctgatatctacgataaaatgcagcctctaattacg
aaaaattcagtgtttaaaatcacaccaaaaacaaataccaaagccacttggataaaaccc
gaactggttgctgaaattaaattttcagaactcacagaagacaatatttacagacatcct
atttttttgaggcttcgggatgacatcgattctaaagatgtaaaattcaattctgaaaat
tcatctaaaaacgagaatatgaaaaagattgaacctaaaaaaagaatgggaaaagatgat
gtattaaagaaaattggaaagcaggaactgaaactgaccaaccaaaacaaaatctacttt
ccggaagacgatattacgaaaggtgatgtaattgacttctaccaaagcatttcgaaatac
attctgccacatcttaaagacagaccacaatctatgaatcgatatcctaacggcataaaa
gggttgagtttctttcaaaaagatgcagcggaagagacaccggaatggatagaaacgcaa
aaagtgttctcagaaagttccgataagtatatcaattatatcatttgcaacgataaagaa
actttggcctatcttaataatctcggctgtatagaactgaatatatggaccagcaaaatt
aaaaaagcagacaatccggattatctcgttcttgatcttgatccgtcagaaaaaaattct
tttgaggatgtaatagaaacagctcaggcagtaaaagaagttctggatcttgcgggagtt
ggcggttatcctaaaacttcgggcagttcaggaatccatgtttacattccaatgaatgcg
aaatactcatatgatcaggtcaaaaattttggacatttattgatgcagatggttcagaaa
aaattaccggatttaactactttggaaagaagcctgcaaaaaagagataagaataaaatt
tatcttgattaccttcaaaataggagaggacagactctggcgagtgtttacagcctcaga
ccgaaaaatggtgtaccagtttctatgcccttagaatggaaagaagttaaaaatggactt
aaaccgaccgacttcaatattcataattcattagaccgtctcaaagaaaagggcgacatc
ttcaaaccgattttaggaaaaggaatagatatgctgaaagctattaagaagctggaggaa
taa
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