Epilithonimonas vandammei: EIB75_11525
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Entry
EIB75_11525 CDS
T06885
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eva
Epilithonimonas vandammei
Pathway
eva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EIB75_11525 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eva03400
]
EIB75_11525 (mfd)
Enzymes [BR:
eva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EIB75_11525 (mfd)
DNA repair and recombination proteins [BR:
eva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EIB75_11525 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AZI55850
UniProt:
A0A3G8ZFJ0
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All DBs
Position
2417046..2420393
Genome browser
AA seq
1115 aa
AA seq
DB search
MELKKINQNLLPDLLQKQFGSEIFSQIVTKQHISVKGSAGSAVSILAAELFLTQNKTILY
LADDKEDALYINAEMEDLLGKDNILYFPATHLEPYQIEKTQNANLVLRTEVINKLNSGKS
PKVIVAFIGAMSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYQFNQTDFVSEPGEF
SVRGGIVDVFSFSNEKPFRITFFGNEVESIRTFDIESQLSLDKIDEFQLVSNMNFSVSGS
KVSFFELLPEDSFIVSKNLYLSARRIKEFHEKALEKYETLSKDIKHRSPDELFISEGEFQ
NKLIKFKTIDFSSQHFNLPKSQIVELNQTQQPSFHKNFELLIQDLEEKQGQGFDTWISFS
SEKQKERLQSIFEELQHEIPFKSFKSELHEGFVDSDNKILIYTDHQIFDRYQRYKSKDGF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLSYKNGDLLYVSI
HSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKARVKQIAFDLIKLYAERKTAKGFQY
SPDSYLQNELEASFLYEDTPDQEKATLDVKKDMENEGVMDRLICGDVGFGKTEVAIRAAF
KAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYMNRFRTAKQKSETKEGLKNGK
IDIVIGTHQLVGKDIKFKDLGLLIIDEEHKFGVSVKDKLKTLKTNVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTSIIGFSEEIIRDAVSYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITGHGQMDGKQMETNILDFMEGKYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKMMQEALEELKDDENFENLFENEEDRN
KLFKSTREVNIDTDLELMLPDDYVSSTEERLSLYQKLADIQSAKELEQFENELIDRFGTL
PDEAINLLKSVELKWLAAEIGFDKLVVKNKVFLGYFPANPQDKFYQSEKFKKIIAYLTQN
PAEATLKEKNNQLMMRKDNVKNVDDVNLVLNRILA
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaaaaaatcaaccagaatcttttgcccgatttacttcagaagcagttcggg
agcgagattttttcgcagatagttactaaacagcatatttcagtcaaaggaagtgccggt
tccgccgtttcaattttggcagcagaactgtttctgacgcagaataaaaccattctttat
ctcgctgacgataaggaagatgcactttatatcaatgcggaaatggaagatttgctggga
aaagataacattctttattttccggccactcatttggaaccttatcagatcgagaaaacc
caaaatgcgaatcttgttctgagaaccgaagtcatcaataaactgaactcaggaaaatct
ccgaaagtgattgtagcttttataggcgcaatgtccgaaaaagtgttgaaaaaagaagat
ttcaaggcgatttctcatcacatcaaagtaggagatcaattggattttgattttgtggat
gagttgctgaatcattaccaattcaaccaaaccgactttgtttccgaaccgggagaattt
tctgtccgtggcggaattgtggatgttttttctttttctaatgaaaagcctttccgaatc
acatttttcggtaacgaagtagaaagtatcaggacttttgatatagaatctcaattgtct
ctggataaaatagatgaatttcagttggtctccaacatgaatttttcggtatccggaagc
aaggtttcgttctttgaattattgccagaagacagttttattgtttcaaaaaacctttat
ctgtccgcaagaagaatcaaggagttccacgaaaaagctttggaaaagtatgaaacactt
agtaaagatatcaagcacagatcgccggacgaattgttcatttctgagggagaatttcag
aataagttgattaagttcaaaaccatagatttcagttcgcagcatttcaacctaccaaaa
tctcagatagttgaactcaaccaaacacagcagccgagttttcacaaaaacttcgaattg
ctgattcaggatttggaagaaaaacaaggacaaggatttgacacttggatttcattttca
agtgaaaaacagaaagaaagattacaatccatttttgaagaacttcagcacgagattccg
ttcaaaagcttcaaatcggaactgcatgaaggtttcgtggattctgataacaagattctg
atttataccgatcatcagattttcgaccgttaccaacgttataaatccaaggatggattt
gctaagtcggagcagctgacactcaaggatttaatgtctctcaaagttggcgattatatt
gctcatattgaccacggaatcgggaaatttatgggattggttaaggtcaataatgacggc
aaaatccaggaatgttttaagttgagttacaaaaacggtgatttgctgtatgtcagcatt
cattcactccataaaatttcgaaatataacgggccagacggaaaagaaattgtccttagc
aaactcggttcaccagcctggaaatcattaaaacaaaaaaccaaggcaagagttaagcaa
atcgctttcgacctgataaaactctatgcggaaaggaaaacggctaaaggatttcagtat
tcgccggattcctacctacaaaatgagctggaagcaagcttcctttacgaagatacacca
gaccaggaaaaagcaacgctggatgtaaaaaaagatatggaaaatgaaggcgtgatggac
cgtttgatctgtggcgatgttggattcgggaaaacggaagttgcgattcgtgccgcgttc
aaagcggcgacagacggcaaacaggttgcgattctggttcccacaacgattctggctttc
caacattacagaagtttcaaagagcgtttgaaagattttccggttaatatttcttatatg
aaccgattccgcacagctaaacagaaatctgaaaccaaagaaggccttaaaaatggtaaa
atcgatattgtcatcggaacgcatcagttggttggtaaagacattaaattcaaggattta
ggattgttgattattgatgaggaacataaattcggcgtttccgtcaaggataaattaaaa
acgcttaaaaccaatgttgatacattgactttaacggcaactcctattcctcggactttg
caattctcattgatggctgcaagagatttatcggtgattaaaacgccgccacccaacaga
caacctgtggataccagcatcattggcttcagcgaagaaattatccgggatgcagtttcc
tacgaattgcagcgcgatggacaggtttatttcatcaacaacagaatcgaaaatctaaaa
gatattgccggactaatccagagactggttccggatgcaagagttattaccggtcatgga
cagatggatgggaaacaaatggaaacgaatatcctcgattttatggaaggaaaatacgat
gttctggtttccacgactattgtagaatccggtgtggatgtcccgaatgcgaatacgatt
ttcattaatgatgcgcaacgtttcggaatggcagacctgcaccagatgcgtggaagagta
gggcgaagcaacagaaaagcattctgttacctgataacgccgccatttgatatgatgacg
tctgatgcgaggaaacgtctcgaagcgattgagcaattctcggatctcggaagtggtttc
cagattgcaatgaaagacctggaaatccggggagcaggggatttgctgggtgctgaacaa
agtggttttattaatgaaatgggatttgagacgtaccagaaaatgatgcaggaagcgttg
gaagagctgaaagatgatgagaattttgagaatcttttcgaaaatgaagaagaccggaac
aaacttttcaaatctaccagagaagtgaatattgatacggatttggaactgatgttgccc
gatgattatgtgagctctacggaagagcgattgtcattgtatcaaaaattagccgatatt
cagagtgcgaaggaactggaacaatttgaaaatgaactgatagaccgattcggaacactg
ccggatgaagcgattaaccttctgaaatctgtagagctgaaatggctggcggcagaaatt
ggatttgataagctggtggtgaaaaataaggttttcctgggttattttccagcgaatccc
caagataaattctatcaaagtgagaaattcaaaaaaataattgcttatctcacacaaaat
ccggcagaagcgacgttaaaagaaaagaacaaccagctgatgatgcgaaaagataacgtg
aagaatgtggatgatgtgaacctggttctgaataggattttggcttaa
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