Epilithonimonas zeae: KI430_12230
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Entry
KI430_12230 CDS
T08226
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eze
Epilithonimonas zeae
Pathway
eze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KI430_12230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eze03400
]
KI430_12230 (mfd)
Enzymes [BR:
eze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KI430_12230 (mfd)
DNA repair and recombination proteins [BR:
eze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KI430_12230 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
UQB67796
LinkDB
All DBs
Position
complement(2717506..2720853)
Genome browser
AA seq
1115 aa
AA seq
DB search
MELKKINQNLLPDLLQKQFGNEIFSQISKHQHISVKGSAGSAGSILASELFLTQNKTILY
LIDDKEDALYINAEMEDLLGSDNVLYFPATHLEPYQIEKTQNANLVLRTEVINKLNSGKS
PKVIVAFIGALSEKVLKKEDFKAISHQIKVGDQLDFDFVDELLNHYQFNQTDFVSEPGEF
SVRGGIVDVFSFSNEKPFRITFFGNEVESIKTFDIESQLSLDKIDEFQLVSNMNFSVSGT
KVSLFELLAEDSFVVSKNLYLSTKRIRDFYEKALEKFETLSKDIKHRSPDELFISEPEFQ
NKLIKFKTIDFSSQSFELPKIQNVELNQTQQPSFHKNFELLIQDLEEKQSQGFDTWISFS
SEKQKERLESIFEELEHEIPFKSFKSELHEGFVDSDNKILIYTDHQIFDRYQRYQSKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVSI
HSLHKISKYNGPEGREIVLSKLGSPAWKSLKQKTKARVKQIAFDLIKLYAERKTAKGFQY
SPDSYLQNELEASFLYEDTPDQEKATLDVKKDMEAEGVMDRLICGDVGFGKTEVAIRAAF
KAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYMNRFRTAKQKSETKEGLKNGK
IDIVIGTHQLVGKDIKFKDLGLLIIDEEHKFGVSVKDKLKTLKTDVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVETQIIGFNEEILRDAISYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITGHGQMDGKQMETNILDFMEGKYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKMMQEALEELKDDENFENLFENEEDRN
KLFKSTKEVNIDTDLELMLPDDYVSSTEERLSLYQKLADVQNAKELQQFENELKDRFGKL
PDEAINLLKSVELKWLAAEIGFDKLVVKNKVFLGYFPANPQDKFYQSEKFKKIISYLTQN
PAEATLKEKNNQLMMRKDNVTNVDEVNLVLNRILA
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaaaaaatcaatcaaaatcttttgccggacttgcttcagaaacaattcggg
aatgagattttttcacaaatatcaaaacatcagcatatttcggttaaaggaagtgcgggt
tctgcgggttcaattctggcttcggaattgtttttgactcagaacaaaacgattctttat
ttgattgatgacaaagaggatgcgctttacatcaatgcggaaatggaagatttgttggga
agcgacaacgttctttattttccagcaacacatcttgagccatatcaaatcgagaaaacc
cagaatgcgaatctggttctgagaactgaagtcatcaataaactgaattccgggaaatcg
ccaaaagtgattgtcgccttcattggtgcgttgtctgaaaaagttctgaagaaagaagat
ttcaaagcaatttctcatcagataaaagtgggtgaccagttggattttgattttgtggat
gagttgctgaatcattatcaattcaaccaaacagattttgtttctgagcctggagaattc
tctgtccgaggcgggattgtggatgttttttctttttctaacgagaagcctttccgaatc
acattttttggaaatgaggtcgaaagcatcaagacttttgacatagaatcccaactttct
ttggataagattgatgaattccagttggtttccaatatgaatttttcggtttcagggacc
aaagtttctttgtttgaactattagcggaagacagttttgtagtttcaaagaatctttac
ctttccaccaaaagaatcagagatttttatgaaaaagcattagagaaattcgaaacgctg
agcaaagacatcaaacatagaagtccagacgaattatttatttctgagcctgaatttcag
aataaattaatcaaattcaaaacaatagatttcagttctcagtcatttgaacttccaaag
attcagaacgtagaactcaaccaaacacaacagcctagttttcataaaaactttgaattg
ctgattcaggatttagaggaaaaacaaagtcaaggttttgacacctggatttcattttca
agtgaaaaacaaaaagaaagattagaatcgatttttgaggaattagagcacgagattccg
ttcaaaagcttcaaatcggaattgcacgaaggttttgtagattctgataataagattctg
atttacacagatcaccagatttttgaccgttaccagagatatcaatccaagaacactttt
gcaaagtcagagcaactgacactcaaagatctgatgtctttgaaagtcggtgattacatt
gcgcatatcgaccacggcatcgggaaatttatgggtttggttaaggttaataatgacggc
aagatccaggaatgtttcaaactgacttacaaaaatggagatttgctttacgtaagtatc
cattcacttcataaaatttcgaaatataacggacctgaaggaagagaaatcgttctcagt
aaactcggttcaccagcctggaaatcattaaaacaaaaaaccaaagccagagttaagcag
attgcttttgatttgataaaactctatgcggaaagaaaaactgcaaaaggcttccagtat
tcgccggattcttaccttcaaaatgagttggaagcgagtttcctttacgaagatacgcca
gaccaggaaaaagcaacgctggatgtgaaaaaggatatggaagcggaaggtgtgatggac
cgtttgatttgcggtgacgttggttttggtaaaacagaagttgcgattcgtgctgcgttt
aaagcagcaaccgacggaaaacaggttgcgattctggttccgacaacaattctggctttc
caacattacagaagtttcaaagaacgattgaaggattttccggtgaatatctcttatatg
aaccgattccggaccgccaaacagaaatcggaaaccaaagaaggtcttaaaaatggtaaa
atcgatattgtcatcgggacccaccagttggttggaaaagatatcaagttcaaggattta
ggtttgttgattattgatgaggaacataagtttggtgtttctgttaaagacaaattgaaa
acgctaaaaaccgatgtggacaccttaacattgactgcgacgccaatcccgagaactttg
caattttcattaatggcagcgcgagatttatcagttatcaaaacgccgccgcctaaccgt
cagcctgtggaaacgcaaatcattggatttaatgaagaaattttgcgtgatgcgatttct
tatgaattgcagagagacggacaggtttatttcatcaacaacagaatcgaaaacctgaaa
gatattgcaggattaatccaaagactggttcccgatgcgagagtgattaccggtcacgga
caaatggacgggaaacaaatggaaaccaacatcctcgattttatggaaggaaaatatgat
gttctcgtttctacaactattgtagaatccggcgtggatgtcccaaacgcaaatactatt
ttcatcaatgatgcgcaacgattcgggatggcagacctgcaccagatgcgtggaagagtc
gggcgaagcaacaggaaagcattttgttacttgataacgccaccgttcgatatgatgacg
tctgatgcgagaaaacgtctggaagcgattgagcaattctcggatcttggaagtggtttc
cagattgcgatgaaggatttggaaattcgtggtgcaggtgatttgttgggcggagaacag
agtggattcatcaacgaaatgggatttgagacgtatcagaaaatgatgcaggaagcttta
gaagaactcaaagatgatgagaattttgaaaatctttttgaaaatgaagaagatagaaac
aagctgttcaaatccacgaaagaagtgaatatcgatactgatctggaattgatgttgcca
gatgattatgtgagttctacggaagaacggttgtcattgtatcaaaagctggccgatgtt
cagaatgctaaggaattgcaacaatttgaaaatgaactaaaagaccgtttcggaaaactg
ccggatgaagccattaaccttctgaaatctgtagaactgaaatggctggcggctgaaatt
ggatttgataagctggtggtgaagaataaagtgtttcttggttatttcccagcgaatcct
caggacaaattctaccaaagcgaaaaattcaaaaaaatcatatcttatctcacacaaaat
ccggcagaagcgacgttaaaagaaaagaacaaccagctgatgatgcgaaaagataatgtg
acaaatgtggatgaagtgaatctggttttgaataggattttggcttaa
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