Flavobacterium agricola: K5I29_01105
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Entry
K5I29_01105 CDS
T09474
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fag
Flavobacterium agricola
Pathway
fag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5I29_01105 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fag03019
]
K5I29_01105 (rny)
Messenger RNA biogenesis [BR:
fag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K5I29_01105 (rny)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF99
KH_2
Motif
Other DBs
NCBI-ProteinID:
UYW01557
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Position
complement(217921..219486)
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AA seq
521 aa
AA seq
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MSTTLIIIFCSVICLLIGFGFAKFLEKNTATSLLKNANSEANSILKDAKAEAESIRKEKL
FQAKEKFLELKSEHEKEILAKDKKMAEAEKRTRDKEAQVSNELAKSKKLNDELSKKMEDY
ENRLEHIDKKEKEIEKLHKHQVEQLEAISGLSQDEAKEQLIENLKADAKLSAMSYIQDTI
EEAKLTAQQEAKKVVINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAA
TGVEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVSKTTKQIEEEI
VEVGKRTVIELGIHGLHPELIKTVGRMKYRSSYGQNLLQHSREVAKLCGIMAAELGLNVK
MAKRAGLLHDIGKVPETESDLPHAILGMQWAEKYGEKAEVCNAIGAHHDEIEMTSLISPI
IQVCDAISGARPGARRQVLDSYIQRLNDLENIAYGFNGVKNAYAIQAGRELRVIVESEKV
SDEMVATLSFDISQKIQTEMTYPGQVKITVIRETRAVNIAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaactttaatcataattttctgttccgtaatctgcttactaattggcttcgga
tttgcaaagtttttagaaaaaaataccgcaacttctttattgaaaaacgcaaattcagag
gcaaattcaattcttaaagatgcaaaagcagaagctgaatctattagaaaagaaaaattg
tttcaagcaaaagaaaaatttttagaactaaaatcagaacacgaaaaagagattttagca
aaagataaaaaaatggctgaagccgaaaaaagaactagagataaagaagctcaagtttct
aacgagttggctaagtcaaaaaaactaaacgatgaactttctaaaaaaatggaagattac
gaaaatcgtttagagcacattgacaaaaaagaaaaagaaatagaaaagttacacaaacac
caagtagaacaacttgaagctatttcgggcttatcacaagatgaagctaaagaacaatta
attgaaaacttaaaagctgacgctaaactttctgctatgtcgtacattcaagatacgatt
gaagaggcaaaattaacagcgcaacaagaagctaaaaaagttgttattaacaccattcag
cgagttggaacagaagaagcggtagaaaactgtgtttctgtttttaatatcgaatctgac
gatgttaaagggcgtattattggtcgtgaaggtcgtaacattcgtgctttagaagctgca
actggggttgaaattattgttgatgatacaccagaggcaattattctttcatgttttgat
ccggttcgtcgtgaaattgcgcgtttggctttacataaattagtaacagacggacgtatt
cacccagcaagaattgaagaagttgtttctaaaacaaccaaacaaattgaagaagaaatt
gttgaagttggtaagcgtactgttatagaattaggaattcatggtttacacccagaatta
attaaaacggtaggtagaatgaaataccgttcatcatacggccaaaacttattacaacac
tcgcgcgaagttgctaaattatgtggtattatggctgcagaacttggcttaaacgttaaa
atggcaaaacgtgcaggtttacttcacgatataggtaaagtaccagaaacagaatctgat
ttaccacacgctattttaggtatgcaatgggcagaaaaatatggtgaaaaagcagaagtt
tgtaatgcaattggagcgcaccacgacgaaattgaaatgacatctttaatttcaccaatt
attcaggtttgtgatgctatttcaggagcaagaccgggagcaagacgtcaggtactagat
tcgtacattcaacgtttaaatgacctagaaaacattgcttacggctttaatggtgttaaa
aatgcttacgcgattcaagcaggtagagaattacgcgtaattgttgaaagtgaaaaagtt
tctgacgaaatggtagcaactttatctttcgatatttcgcaaaaaattcaaaccgaaatg
acatacccaggtcaagtaaaaattacggttattagagaaacaagagctgttaacatagct
aaataa
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