Flavobacterium agricola: K5I29_02120
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Entry
K5I29_02120 CDS
T09474
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fag
Flavobacterium agricola
Pathway
fag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5I29_02120 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fag03021
]
K5I29_02120 (rho)
03019 Messenger RNA biogenesis [BR:
fag03019
]
K5I29_02120 (rho)
Transcription machinery [BR:
fag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K5I29_02120 (rho)
Messenger RNA biogenesis [BR:
fag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K5I29_02120 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
AAA
AAA_16
Mor
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UYW01742
LinkDB
All DBs
Position
436794..438521
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AA seq
575 aa
AA seq
DB search
MFDTSDLKKKSVADLKEIAKALAVEFTSAPKKNDIIEAILLKVQADTKTEESQTSSTDVS
EANKPKRGRTKKVTPASTENSSTQLALEVVAEPNENATPATENNGTKLRNRLRKPEDRKQ
PNSEAKKTTHESKPHKERKTQVYEATANTTKDVVPTEVEEGIVVEEAVHEPAENKHNHQT
RNKFKDPNFEFDPIIEAEGVLDISETGNGFLRSADFNYQQSPDDIYVSQSQIRKFGLKTG
DTVCGEVRPPKDQERHYPLIKVVKINGFDPKTIQDRIAFEHLTPIFPTEKFKLDGKNSTE
STRIIDLFAPIGKGQRAMIVAQPKTGKTTLLKEIANAISANHPEAFLIVLLIDERPEEVT
DIMRNVDAEVIASTFDEPAKKHVDVANITLEKAKRLVECGHDVVILLDSITRLARAYNTT
QPPSGRVLSGGVDANALQKPKRFFGAARNIEGGGSLTIIATALTETGSKMDEVIFEEFKG
TGNMEVQLDRKISNKRIYPAIDLLNSSTRRDDLLLQKELDLGLSAFRYLAIDRISDKNDK
NDKGAIESISFVKEAIKNTQNNEELLLTLKDRKHH
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacacatctgatttaaagaaaaaaagtgttgcagatttaaaagaaatagccaag
gcccttgccgttgaatttacttctgctcctaaaaaaaatgatattatagaagcaattttg
cttaaagttcaggccgatacaaaaacggaagaatctcaaacatcttcaaccgatgtttcc
gaagcaaataaacccaaacgcggaagaactaaaaaagttactccagcttctacagaaaat
agcagtactcaactagcacttgaagttgttgccgagcctaatgaaaatgcaacgccagca
acagaaaataacggtactaagctcagaaatagattacgtaaacctgaagatagaaaacaa
ccgaattcggaagctaaaaaaacaacccacgaaagtaaaccgcataaagaacgtaaaaca
caagtttacgaagctacagcaaatactactaaagatgtagttccgactgaagttgaagaa
ggaattgttgttgaagaagcggttcatgaaccagcagaaaacaaacacaaccatcaaaca
cgcaacaagtttaaagatccaaattttgaatttgacccgattattgaagcagaaggcgtt
ttagatatttctgaaaccggaaacggttttttacgttctgccgattttaattaccaacaa
tctccagatgatatttatgtttcacaatctcaaatcagaaaatttggattaaaaaccgga
gataccgtttgtggcgaagttcgtccaccaaaagatcaggaaagacattatccgttaatt
aaagtagttaaaattaatgggttcgatcctaaaaccattcaagaccgaattgctttcgag
catttaacaccaatatttcctaccgaaaaatttaaattagacggaaaaaattctaccgaa
tcaactcgtattattgatttatttgctccaatcggaaaaggacaacgtgctatgattgtg
gcgcaacctaaaacgggtaaaacaactttgcttaaagaaattgctaatgctatttctgcc
aatcatcctgaagcttttttaattgttttattaattgatgagcgtccggaagaagttaca
gatattatgcgcaatgtagatgcagaagttattgcatcaacctttgatgaacctgctaaa
aagcacgttgatgtagcaaatattacattagaaaaagccaaacgtttggtagagtgcggg
catgatgttgttattttattagattctataacgcgtttagctcgtgcttacaataccact
caaccgccatcgggccgtgtattatcgggtggggtagatgccaatgccttgcaaaaacca
aaacgtttttttggtgctgcacgtaatattgaaggcggtggatcattaaccattattgca
acagctttaaccgaaactggatctaaaatggacgaggttatttttgaagaatttaaaggt
actggtaatatggaggtacagttagatcgtaaaatatctaacaaacgcatttacccagct
atagatttattaaattcatcaacacgtcgtgatgatttattattacaaaaagaattggat
ttaggtttatcagctttccgttatttagcaattgatcgtatttcggataaaaatgataaa
aacgataaaggagcaatcgaatctatttctttcgttaaagaagcgattaaaaatacgcaa
aacaacgaagaacttttacttactttaaaagatagaaaacatcattaa
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