Frankia alni: FRAAL0410
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Entry
FRAAL0410 CDS
T00384
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fal
Frankia alni
Pathway
fal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRAAL0410 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fal03019
]
FRAAL0410 (deaD)
03009 Ribosome biogenesis [BR:
fal03009
]
FRAAL0410 (deaD)
Enzymes [BR:
fal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRAAL0410 (deaD)
Messenger RNA biogenesis [BR:
fal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRAAL0410 (deaD)
Ribosome biogenesis [BR:
fal03009
]
Prokaryotic type
rRNA helicases
FRAAL0410 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
WSD
ResIII
DAG1
Motif
Other DBs
NCBI-ProteinID:
CAJ59085
RhizoBase:
FRAAL0410
UniProt:
Q0RTL3
LinkDB
All DBs
Position
complement(478568..480394)
Genome browser
AA seq
608 aa
AA seq
DB search
MSSTTDPEPDPAGDEAQAREVGPARGNPAGDVEPAGDVEPAGDMAPAGDIDPAEDVAGFA
ELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHRLT
DDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQGVD
VVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFS
ATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDVES
PRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLVATDV
AARGLDFEQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT
RQRIAVEKVPTVADLHARRLELTRAALQESLLEDDLERFRVVVETLTDEFDPMEIALAAV
KLAHDASFVPNDADDIPDLPPATDARGERTGRDGAGRRERRPRPASGGMARLFVGAGRGA
GVRPQDLVGAITGETRLSGRDIGAIEIAQRFSLVEVPDGAADEVIASLRGSTIKGRRVAI
RRERQDSR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgaccaccgatccggaaccggacccggcgggggacgaggcccaggccagggag
gtcggcccggcacggggcaacccggcaggagacgtcgagccggccggagacgtcgagccg
gccggagacatggccccggccggagacatcgacccggccgaggacgtggccggcttcgcc
gagctggcgctgcggcccgaactgctgcgcagcctcgccgccctcgggtacgaggagccg
acgccgatccagcgggaggccgttccgcccctggtcgcgggccgcgacctgctcggacag
gcggcgaccggcaccggaaagaccgcggcgttcgccctccccctgctgcaccgcctgacc
gatgaccgcaccggcgaccatggcccgcaggccctggtgctcgtcccgacccgggaactc
gccgtccaggtgtccgaggcgatccaccggtacggtcgcgacctcggcgcccgggtcctg
ccggtgtacggcggggctccgatcggccggcaggtgcgcgcgctggtgcagggcgtcgac
gtcgtggtcgccacgcccggccgcgcgctcgatcacatgggtcgcgggacgctgcggctc
gacggcctgcacaccgtcgtcctcgacgaggccgacgagatgctcgacatgggcttcgcc
gaggacatcgacgcgatcctcgagcaggcaccgcagaagcgccagaccgtgctgttctcg
gcgacgttaccgccgcggatggaccagatcgcccggcgccacctgcgcgatccggtccgc
atccagatcggccgcgcggcgccggagccgggcgcggcgccgctggtccggcaggtctcc
tacgtggtcccgcgggcctacaagacggcggcgctcggccgcatcctcgacgtcgagtcg
ccccggtcggcgatcgtgttctgtcgcacccgagaggaggtcgaccagctcgccgactcg
ctcaacgggcgtggctaccgggcggagtccctgcacggcgggatgagccaggagcagcgg
gaacgggtgatggagcggctgcgcacagcgacggccgacctgctcgtcgcgaccgacgtc
gccgcccgcggcctggacttcgagcagctcacccacgtggtgaactacagcgtcccgtcg
gcgccggactcctacgtccaccggatcggccgggtcgggcgggccggccgcgagggggtg
gccatcaccctggcggagccgcgcgagcaccggatgctcaagacgatcgagcgggtcacc
cggcagcggatcgccgtcgagaaggtgcccaccgtcgccgatctgcacgcccggcggctg
gaactgacccgtgccgcgttgcaggagagcctgctcgaggacgatctggagcggttccgc
gtcgtcgttgagacgctcaccgacgagttcgaccccatggagatcgcgctcgcggccgtg
aagctcgcccacgacgccagcttcgtgccgaacgacgccgacgacatccccgacctgccg
ccggcgaccgacgcgcgcggcgaacggacgggacgcgacggcgccggccgccgggagcgg
cgaccccgaccggcgagcgggggcatggcccggttgttcgtcggtgcgggccgcggcgcc
ggcgtccggccgcaggacctcgtcggcgcgatcaccggggagacccggttgtcgggccgc
gacatcggcgccatcgagatcgcgcagcggttctcgctcgtcgaggtgcccgacggcgcg
gccgacgaggtgatcgcgtcgttgcgcggaagcaccatcaagggtcgccgggtcgccatc
cgtcgcgagcgccaggacagtcgctag
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