Frankia alni: FRAAL6237
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Entry
FRAAL6237 CDS
T00384
Name
(GenBank) Transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fal
Frankia alni
Pathway
fal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRAAL6237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL6237
Enzymes [BR:
fal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRAAL6237
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRAAL6237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
Glyco_tran_WecG
AroM
Motif
Other DBs
NCBI-ProteinID:
CAJ64860
RhizoBase:
FRAAL6237
UniProt:
Q0RCG4
LinkDB
All DBs
Position
complement(6767661..6771401)
Genome browser
AA seq
1246 aa
AA seq
DB search
MGPVAPGRRAPRRWFSCRGVCSTPVPSRSLPRGTPDATMTLAPLLDALIARPGGDPALGR
AIGAAGEPALDLAGPAALRPFAAAALAAAHGAGRPVLAVVATGREAEDLTAALAGLLGPE
VVAVFPSWETLPHERLSPRADTVGQRLAVLRRLAHPASTGLPPLRIVVAPVRSVLQPQVA
GLGELAPVSLAAGDTADLDEVVARLVGMAYHRVDLVERRGEIAVRGGILDVFPPTEEHPL
RVEFFGDEVEDIRRFAVADQRALPEGDSGPPGPGGRGLFAPPCRELLLTEDVRGRAAELA
TRYPQLVDMLDTIASGIPVEGMEALAPVLVDGMSLLLDDLPAGTHVLVCDPERVRSRASE
LVRTSQEFLEASWSVAALGGGAPIDLGAAAYRSIAEVRERAGALGLPWWSVSPFTSTLTG
AEAGGLDQVGQADAAAGVAGGLVAEGDDTVVASLRPAPLYHGDTAAVIADVKGWLAESWR
VLLVTEGHGPAQRLVEMLREADLGARYAEDAELAAGVAVVTRGQLVTGFTSDMLRLAVLT
ESDIAGARGVTTKDMRRMPSRRRKGIDPLALVPGDMVVHDAHGVGRYVEMVTRTVAGAKR
EYLLLEYARGDRLYVPTDQLEQITRYVGGDAPSLDRIGGADWAKRKSRARKAVKEIAGEL
IRLYSARMAAPGHAFAPDNPWQRELEDAFPFRETPDQLAAIDEVKADMEKPVPMDRVICG
DVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTFSERYAAFPVIVKAMSRFNS
AGEQKAVADGLADGTVDVVIGTHRLLSGENRFKDLGLVIVDEEQRFGVEHKEQLKKMRTA
VDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPVLTSVAPYDTRQVAAAIRRELLR
EGQVFFIHNRVESIDRAAARLRELVPEARIATAHGQMNEDALEQVMVSFWEKKFDVLVCT
TIVESGLDISNANTLVVERADVFGLSQLHQLRGRVGRGRDRAYAYFLYPPDKPLTETAHD
RLATIAQHNDLGAGMAVAMKDLEIRGAGNLLGGEQSGHIASVGFDMYVRMVGEAVAEYRK
DKVEEPPEVKVELPVDASLPHDYVPSERLRLDAYRRLAGAGTDADIDEVRGELVDRFGPV
PEPVENLLAVAGLRVLARSFGVTEITAAGRQIRFAPLELRESQTLRLTRLYKGAVVKPAV
RIVLVPAPTETGRIGSRPLRDRALLAWAGQLLTAVAGDSVAAAAAG
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
gtgggccccgttgcgccaggtcgtcgtgctccgcggcggtggttttcgtgccgcggcgtc
tgctccacgcctgttccgtcccgctcgcttccgagaggcacaccggacgcaaccatgact
ctcgcgccgctgctcgacgcactgatcgcccggccgggcggcgatcccgccctggggcgc
gcgatcggcgcggcgggcgaacccgcgctcgacctcgccggtcccgccgccctgcggccc
ttcgccgccgccgccctcgccgccgcccacggagccgggcgtcccgtcctcgccgtggtg
gccacgggccgcgaggccgaggacctgaccgccgcgctggccggtctgctcggtcccgag
gtggtggccgtcttcccgagctgggagacgctgccgcacgagcggctctcgccccgcgcg
gacacggtgggtcaacgcctggccgtgctgcgccggctggcccacccggcgagcaccggc
ctgccgccgctgcgcatcgtcgtcgcgccggtccgctccgtgctccagccccaggtcgcc
gggctcggcgagctcgccccggtcagcctcgcggcgggcgacaccgccgacctcgacgag
gtggtcgcccggctggtgggcatggcctaccaccgggtggacctggtggagcggcgcggc
gagatcgccgtgcgcggcgggatcctcgacgtcttcccgccgaccgaggagcacccgctg
cgggtcgagttcttcggcgacgaggtggaggacatccgccggttcgccgtcgccgaccag
cgggcgctgcccgagggcgactccgggccgcccggccccggcgggcgcggcctgttcgcg
cctccgtgccgcgagctgctgctcaccgaggacgtgcgcggccgggccgccgagctggcc
acccgctacccccagctcgtggacatgctcgacacgatcgcgagcggcattcccgtcgag
gggatggaggcgctggccccggtcctcgtcgacgggatgtcgctgctgctcgacgacctg
cccgccggcacccacgtcctggtctgcgacccggagcgggtccgctcacgggcgagcgag
ctggtgcgcacgagccaggagttcctggaggcgtcctggagcgtcgcggcgctcggcggc
ggcgcgccgatcgacctcggcgccgcggcctaccgctccatcgcggaggtccgcgagcgc
gccggcgcgctgggactgccctggtggtcggtcagccccttcacctccaccctcaccggc
gccgaggccgggggcctcgaccaggtcggccaggccgacgcagcggcgggcgtggccggc
ggtctcgtcgcagagggtgacgacacggtggtcgcgagcctgcggccggcgccgctttat
cacggcgacaccgccgccgtgatcgccgacgtcaagggctggctggccgagtcgtggcgg
gtgctgctcgtgaccgagggacacggcccggcccagcgcctggtggagatgctgcgcgag
gccgacctgggcgcccgctacgccgaggacgccgagctcgccgccggggtcgccgtggtg
acccgcgggcagctcgtcaccggcttcaccagcgacatgctgcgcctcgcggtcctcacc
gagagcgacatcgccggcgcccgcggggtcaccaccaaggacatgcggcggatgcccagc
cggcggcgcaagggcatcgacccgctcgccctggttcccggcgacatggtcgtccacgac
gcgcacggcgtcggccgctacgtcgagatggtgacccgcaccgtcgccggcgcgaagcgc
gagtacctgctgctggagtacgcccggggcgatcggctctacgtccccaccgaccagctc
gaacagatcacccgctacgtcggcggcgacgcgccgagcctggaccgcatcggcggcgcc
gactgggccaagcgcaagagccgcgcccgcaaggcggtcaaggagatcgccggggagctg
atccggctctacagcgctcggatggccgcccccgggcacgccttcgccccggacaacccg
tggcagcgcgagctggaggacgccttccccttccgcgagacgcccgaccagctggccgcg
atcgacgaggtcaaggccgacatggagaagccggtcccgatggaccgggtgatctgtggc
gacgtcggctacggcaagacggagatcgcggtgcgggcggcgttcaaggccgtccaggac
ggcaagcaggtcgccgtgctggtcccgacgacgttgctggtccagcagcacttccagacg
ttctccgagcggtacgcggcgttccccgtcatcgtgaaggcgatgagccggttcaactcg
gccggcgagcagaaggccgtcgccgacggcctcgccgacgggaccgtcgacgtcgtcatc
ggcacccaccggctgctgtcgggggagaaccggttcaaggacctggggctcgtgatcgtc
gacgaggagcagcgtttcggcgtcgagcacaaggagcagctcaagaagatgcgcacggcg
gtggacgtgctcacgatgagcgccaccccgatcccgcgcaccctggagatgtcgatcacc
ggcatccgggagctgtcgaccatcgacaccccgccggaggaacgccacccggtgctgacc
tccgtggccccctacgacacccggcaggtcgccgccgcgatccgccgcgagctgctgcgg
gagggccaggtcttcttcatccacaaccgggtggagtccatcgaccgggccgccgcccgg
ctgcgcgagctggtccccgaggcgcggatcgccaccgcgcacggccagatgaacgaggac
gccctcgaacaggtgatggtctccttctgggagaagaagttcgacgtcctggtctgcacg
acgatcgtcgagtcggggctggacatctccaacgccaacaccctcgtcgtcgaacgggcc
gacgtgttcggcctgtcccagctccaccagctgcgcggccgggtcggccggggccgcgac
cgcgcgtacgcgtacttcctgtacccgccggacaagccgctgaccgagaccgcccacgac
cgcctggccaccatcgcccagcacaacgacctcggtgccggcatggccgtggccatgaag
gacctggagatccgcggcgccggcaacctgctcggcggcgagcagtccgggcacatcgcc
tcggtcggcttcgacatgtacgtgcggatggtcggcgaggcggtcgccgagtaccgcaag
gacaaggtcgaggagccacccgaggtcaaggtcgagctccccgtcgacgcgagcctgccg
cacgactacgtgcccagcgagcggctgcgcctggacgcctaccgccgcctcgccggcgcc
ggcaccgacgccgacatcgacgaggtgcgcggcgagctcgtggaccggttcggcccggta
ccggagccggtggagaacctgctcgccgtcgccggcctgcgggtgctcgcgcgcagtttc
ggcgtcaccgagatcaccgccgccggccggcagatccgcttcgcgccgctggagctgcgg
gagagccagaccctgcggctgacccgcctgtacaagggcgcggtggtgaagcccgcggtg
cggatcgtgctggtgccggcgccgacggagaccggccgcatcggctcgcggccgctgcgc
gatcgggcgctgctcgcgtgggccggtcagctcctgaccgccgtcgccggcgattcggtc
gccgcggcggccgctggctga
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