Flavobacterium album: HYN59_05315
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Entry
HYN59_05315 CDS
T06577
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
falb
Flavobacterium album
Pathway
falb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
falb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN59_05315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
falb03400
]
HYN59_05315 (mfd)
Enzymes [BR:
falb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN59_05315 (mfd)
DNA repair and recombination proteins [BR:
falb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HYN59_05315 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWH84572
UniProt:
A0A2S1QVX4
LinkDB
All DBs
Position
complement(1186475..1189837)
Genome browser
AA seq
1120 aa
AA seq
DB search
MRPEFLDKYGQSPKVKQIADAIAKPENKLQVKGLLGSSLSFVIDPLFRQSELPFLLILKD
KEEAAYYLNDLEQLIGDQDVLFYPGSYRRPYQIEETDNANILLRAEVLNRINSRKKPAII
VSYAEALFEKVVTRKELEKNTLKIATGDLVSIDFINEVLFEYEFRRVDFVSEPGEFSVRG
GIVDVFSFSNDNPYRIEFFGNEVDSIRTFDVASQLSLEKKKKITVIPNVENKFLQEKRES
FLEYISEKTVIFIKDSEASLAQLDILFGKANEAFDKLSKDLKHASPEELFLNQQAFLKKA
LDFTIVELGNRATFKISQVFEFHIQPQPSFNKQFDLLLNNLHENHHNGFKNYLFCSNEAQ
AKRFDGIFESLDEANHESTRKQYKTIVFPIYEGFVDEENQIACYTDHQIFERYHKFSIKN
GYSKKQTITLKELNSLSVGDYVTHIDHGIGKFGGLQKIQVEGRTQEAIKLVYADNDIVYV
SIHSLHKISKYNGKDGAPPKIYKLGSGAWKALKQKTKARVKHIAFNLIQLYAKRRLEKGF
QYAPDSYLQAELESSFIYEDTPDQITATRDVKADMESERPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAILVPTTILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKADTLKQLED
GKLDILIGTHQLVGKGVKFKNLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIESQVVGFNEEVIRDAISYEIQRGGQVFFIHNRIEN
IKEVAGMIQRLVPGAKVGVGHGQMDGKKLEELMLAFMEGDFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFIAPPYSAMTEDARKRIQALEQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKIMNEAIEELKENEFKDLYDDGDDD
TEKEYVKDLQIDTDFELLFPDEYINNITERLNLYNDLATIKDEAGLIAFEQKLIDRFGPL
PKQAQALLTSMRIKWAATKMGLEKLVLKQGKMVGYFVGDQQSDYYQSASFRKVLKFVQQF
PTLSKMKEKQTKNGLRLLLTFENVKSLKKALELLEMVFEE
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgagacctgaatttttagataaatacgggcagtcgcccaaagtaaagcagatcgccgac
gctatcgcaaagccggagaacaagctgcaggtaaagggccttttgggctcttcgctgtct
tttgtcatcgacccgctgttccgccaaagcgagctaccgttcctcctcatcttaaaagac
aaggaagaggccgcctattacctaaacgacctggagcagctcataggcgaccaggatgtg
ctgttctatcccggctcctaccgccgcccttaccagatagaggagaccgataatgccaac
atactgctgcgtgccgaggtgctcaaccgcatcaactcacgtaagaagcccgctataatc
gtctcttatgccgaagccctttttgagaaggtagtaacgcgcaaagagcttgaaaagaac
accctgaagatcgcgacaggcgaccttgtatctatcgactttatcaatgaggtgcttttc
gaatatgagttccgccgtgtggatttcgtttccgaaccgggcgaattctctgtgcgcgga
gggattgtggacgtgttctctttttcgaatgataacccttaccgtatagagttcttcggt
aatgaggtagacagcattcgtacgttcgatgtggcctcgcagctgtcattggaaaagaaa
aagaaaattaccgttatcccgaacgttgagaataaattcctccaggaaaaaagggagagc
tttctggaatatatcagtgaaaaaacggtcatctttataaaagacagcgaggcatcactg
gcacagctggatattcttttcggcaaggccaatgaagctttcgacaaattatccaaagac
ctgaagcacgcctctccggaagagctgttcctcaaccagcaggcattcctgaaaaaagca
ttagactttactatagtagaactgggcaaccgcgccactttcaaaataagccaggtgttc
gagttccatatacagccgcagccgtcgttcaacaagcagttcgacctgctgctgaacaac
ctgcacgagaatcaccataacggttttaagaattacctgttctgctcgaatgaagcgcag
gccaaacgctttgatggcatttttgaaagcctggacgaagccaatcatgaaagtacgcgc
aagcagtataaaaccatcgtcttccccatttatgaaggctttgtagacgaagaaaaccag
atcgcctgctacaccgaccaccagatatttgaacgctaccacaagttcagcatcaagaac
gggtattcgaaaaagcagaccattacactgaaagaactcaactcactttccgttggcgat
tatgtaacgcacatcgaccatggtatcgggaaattcggcggactgcaaaaaatacaggtg
gaaggcaggacacaggaagcgataaagctcgtgtatgcggacaatgacattgtgtatgtg
agcatccactcgctgcacaaaatatcgaaatacaacggcaaggatggtgcgccacctaag
atatacaaactaggttccggtgcatggaaagctctcaagcagaaaacaaaggcacgtgtt
aagcacattgcctttaacctcatacagctctatgccaagcgccggttggagaaaggattc
caatacgcgcccgacagctatttgcaggccgagctggagtcgtctttcatttacgaagac
acacccgaccagatcaccgcaacacgtgatgtaaaagccgacatggaaagcgagcgccct
atggaccgcctggtgtgtggcgatgtgggctttggcaagaccgaagttgcgatacgtgcc
gcctttaaagctgtggataacggcaagcaggtagccatccttgtaccaactaccatactt
gcctaccagcattaccgcacttttagcgaacgattgaaagatatgcctgtgagcatcggg
tacctgaaccgtttccgtactgccaaacaaaaggctgataccctgaagcaactggaagac
ggtaagctggacatcctcattggtacgcaccagctggttggcaaaggcgtgaagttcaaa
aacctggggctgcttatcgtagacgaggaacagaaatttggcgtaaacgtaaaagacaaa
ctgaagacgattgccgccaatgtagacacccttacactaacagccaccccaataccaagg
acactgcaattctcgctcatggcagcacgcgacttatctgtaattaccacgccgccgccc
aaccgctatcctatagagagccaggtggtgggctttaatgaagaggttatccgcgatgcc
atttcgtatgagatacagcgcggtgggcaggtgttctttatccataaccgtatcgagaac
attaaggaagtagccggaatgatacagcggctggtgccgggtgcgaaagtcggcgtaggc
catggccagatggatggtaaaaaactcgaggaactgatgcttgcttttatggaaggcgat
tttgatgtgctggttgccacgaccattattgaaagcgggcttgacgtacccaatgccaat
acaatatttatcaacaatgccaataacttcgggctgtccgacctgcaccagatgcgcggc
cgcgtaggccggagcaacaagaaagcgttttgttatttcatagcgccaccgtattcggct
atgaccgaggatgcccgcaagcgcatacaggcgctggagcagtttagcgagctgggtagc
gggttcaacattgcgatgaaggatttggagatacgcggggcaggggatcttttaggcggc
gaacagagcggtttcatcaacgagatcgggtttgaaacctaccagaagattatgaatgaa
gccattgaggagctgaaggaaaacgaattcaaagacctgtatgacgatggcgatgacgat
accgaaaaagaatacgtaaaagatctgcagatcgacaccgacttcgagctgctgttccct
gacgaatacatcaacaacattaccgaaaggctcaacctgtataacgaccttgctaccatc
aaggacgaagccgggctcatcgccttcgagcaaaagcttatcgaccgtttcgggccgctg
ccaaaacaggcacaggcgctgcttaccagtatgcgcattaagtgggctgcgaccaaaatg
ggcctcgaaaaactggtattgaagcagggcaaaatggtaggctattttgtaggcgaccaa
caaagcgattactaccagtcggcatccttccgtaaagtgctgaagttcgtgcagcagttc
ccgaccttatctaaaatgaaggaaaagcaaacgaagaatggattgcgcttgctgcttaca
tttgagaatgtgaaatcgttgaagaaagcattggagttactggagatggtgtttgaggag
tag
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