Flavobacterium album: HYN59_12360
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Entry
HYN59_12360 CDS
T06577
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
falb
Flavobacterium album
Pathway
falb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
falb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYN59_12360 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
falb03400
]
HYN59_12360 (ligD)
Enzymes [BR:
falb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYN59_12360 (ligD)
DNA repair and recombination proteins [BR:
falb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYN59_12360 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AWH85846
UniProt:
A0A2S1QZN5
LinkDB
All DBs
Position
complement(2751786..2754590)
Genome browser
AA seq
934 aa
AA seq
DB search
MKKLSEYNRKRDFDKTKEPEGKVKKSGKELHFVVQKHDASRLHYDWRLEINGVLVSWAVP
KGPIADTSVKRLAMHVEDHPMDYIDFEGTIPKGQYGGGTVMVWDTGTYLAEGSDDVAESE
KMLRKMHKDGNIKVVMHGKKLKGSYHLVRMSGKEDEWLLLKGKDEYADKREFDQHSVLTG
RTLEEIENDNKSEVWQSNREEKKSFHGDVDHILDEEPEKSSQSQSKSKSKPTAKKKTKAT
EKTETLTSTKNSPTFTAEDVAAAKVRKTFPKEWKPQLATLADAIFDSDEWVFENKYDGYR
ALIQIHKGKVELVSRNSLSFNSKYKELVEAFSIIKDDMILDGEIVVEDEKGLSHFQWLQY
FAENPNRGKLKCYVFDILYFNGYDLTSLELLQRKRILEAVLPQTDEIIYSGHIAGEGTKA
MKEAEAKGTEGLIAKKITSHYHVNKRSKEWLKIKVTKEQEMVIGGFTEPKGSRSGFGSLL
LGYYEGNDLIYTGKVGTGFNEDSLKDMYEKLTALVQKTSPFKVKPREPKVHWIKPELVAQ
IKYSEWTETNSLRHPVFIALRTDKKPKDVKKEIATPTDKVVPEEKGKKEVKKTKAIEKAE
ESTITKTSAKAKEKPADETKTGTPKAKTVTKKKSKTGKPGWDTEKVEVTHPEKVFWPKEG
YTKGDVINYYDEMAKWILPYIKDRPQSMRRTPNGIDHEGFFQKNVAGSAPDWAQTEKIHS
DSTDEDIEYLICNDKETLIYMANLGCIEINPWSSRLGSLDNPDYIIFDLDPNETTMENLV
TTAKKVKEILDTLGIKGYLKTSGGKGLHIFIPIKPKYTYEQSRDFSHIISQAVNNALPKI
TSLERMPKKRIGKVYLDFLQNGKGKTMSCAYSLRPRDGATASTPLEWEELDEKNFTVKNY
NIKTLPERVKEKGDLWEDFFDNAVDLKELLDKLG
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagctatctgaatataaccgcaaacgtgatttcgacaagacaaaggaacctgaa
ggtaaagtaaaaaagtcgggaaaggaactgcattttgttgtacagaaacatgatgcttcg
cggcttcactatgactggaggctcgagatcaatggcgtgctggtaagctgggcggtacca
aaagggcctattgcggatacttcggtaaagcggcttgccatgcatgtggaagaccacccc
atggactatattgattttgaaggtacgatacccaaagggcaatatggcggcggtaccgtg
atggtatgggatacggggacttatctggcagaaggttcagatgacgtggcggagagtgag
aagatgctcaggaagatgcataaggatggtaatattaaagtcgttatgcatggcaaaaag
ctgaaaggctcctatcacttagtccgtatgagcgggaaagaggacgaatggctgctgcta
aaaggcaaggatgaatatgcagataaaagggaattcgaccagcattcggtacttacaggg
cgaacgctggaggaaattgaaaacgacaacaaatcggaagtatggcaaagcaacagggaa
gaaaaaaagagcttccacggcgatgtagatcatatcctcgatgaagaacctgagaagagt
tctcagtctcagtcgaaatcaaagtcaaagccgacagcaaaaaagaaaactaaagctact
gaaaaaactgagactttgacttcgactaaaaactcccccactttcacagccgaagatgtg
gccgctgccaaagtccgcaagaccttccctaaggaatggaaaccacagctggcaacactg
gccgatgccatttttgatagtgacgaatgggtattcgaaaacaaatatgacggctatagg
gccctgattcaaatacacaaagggaaggttgaattagtatcccgtaatagcttgtcattc
aattcaaaatacaaggaactggttgaagcctttagtattataaaagacgatatgatcctg
gatggcgagatcgttgtggaagatgaaaaagggctgagccatttccaatggctgcagtat
tttgccgagaaccctaatcgcgggaagttgaaatgctatgtgttcgacattttgtatttt
aacggttacgaccttacttcactggaattgctgcaacgcaagcgtatactggaagctgtg
cttccgcaaacggacgagatcatttattccggacacattgcaggcgaaggcacaaaagcc
atgaaagaagctgaagcaaagggcacggaagggcttatcgcaaaaaagataacctcccat
taccatgtgaacaagcgcagcaaggaatggctgaaaataaaagtcaccaaagaacaagag
atggtgataggcggttttacggaaccaaagggttcccgcagtgggttcggttccctcctg
ctgggttattatgaaggcaacgacctgatttataccggtaaggtaggaacaggatttaac
gaagactcgttaaaggatatgtatgaaaaactgacggctttggtacagaaaacatcgcct
tttaaagtaaaaccgagagagccaaaagtacactggataaagccggaactcgttgcccag
ataaaatactcggagtggacagagaccaacagcctgcgccatcctgtatttatcgcgcta
cgtaccgataaaaaaccaaaagacgtgaaaaaagaaattgcgacacctaccgataaagta
gttcctgaagagaaaggaaaaaaagaagttaaaaagacgaaggctatcgaaaaagctgaa
gaaagcacaataacaaaaacttcggcgaaagctaaagaaaagcctgctgatgaaactaaa
accggaacaccaaaagctaaaacagtcacaaaaaaaaaatccaaaacaggtaagcccgga
tgggacaccgaaaaagtcgaggtaacccatcctgagaaagtattttggccgaaggaaggt
tataccaagggcgatgtgatcaattactatgatgaaatggcgaagtggatattaccgtac
atcaaagacaggccgcagtcaatgcgcaggacaccaaatgggattgaccatgagggattc
tttcaaaagaatgtagccggctccgcaccggactgggctcaaacggagaagatccattct
gattctaccgatgaggatattgaataccttatctgcaatgataaagagacgctgatttac
atggccaatttgggctgcattgaaatcaacccatggagcagccgcttaggttcgctggat
aatcctgactatattatcttcgacctggatcccaatgaaaccaccatggaaaaccttgtt
actacggcaaaaaaggtgaaagagatactggatacgcttggcattaaaggctaccttaaa
acctcgggtggcaaagggcttcatatttttatccccatcaagcctaaatatacttacgag
caaagccgtgatttttcgcatattatcagccaggcagtaaataatgcactgccgaaaata
accagcctggaacgtatgcctaaaaaacgcattggcaaggtgtacctcgacttccttcaa
aacgggaaaggtaaaaccatgtcctgcgcctattccctccgaccgcgagatggcgctaca
gcaagcacaccattagaatgggaagaactggatgaaaagaattttacggtaaagaattac
aacatcaagacactgccggaacgggtaaaagaaaaaggcgacttatgggaagactttttt
gataatgctgtagatctgaaggagctgttggataagttggggtag
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