Flavobacterium ammoniigenes: GENT5_06370
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Entry
GENT5_06370 CDS
T08752
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fan
Flavobacterium ammoniigenes
Pathway
fan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GENT5_06370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fan03400
]
GENT5_06370 (mfd)
Enzymes [BR:
fan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GENT5_06370 (mfd)
DNA repair and recombination proteins [BR:
fan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GENT5_06370 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BDB54332
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All DBs
Position
715640..719002
Genome browser
AA seq
1120 aa
AA seq
DB search
MSKTIYSIYDNSPKTEQISTLLGQNNTAKIQLSGLVGSSISFLIRSLFKKSELPFVLILN
DKEEAAYFLNDLEQMVGDQDVLFYPASFRRPYQIEETDNVNVLLRAEVLNRINSRKKPAI
IVSYPEALFEKVVTRKELDKNTLKVAVGDQISIDFINEVLFEYEFKRVDFITEPGEFSVR
GGIVDVFSFSNDNPYRIEFFGNEVDSIRTFDVATQLSLEQQKKIAIIPNVENKFLQENRE
SFLDYISEKTVICIQNTEGLLSQLDKQFAKAEEAFETLSKDIKHATPEQLFLNQEQFVKR
ALNFSVVELDSKPIFKTIKKFDFHTQPQPSFNKQFDLLLNNLNDNHFNGYKNYLFCSNDN
QAKRFHDIFETLDEANSENIRKQYNTVVLPLYQGFIDEENQITCYTDHQIFERYHKFSIK
NGYSKKQNITLKELTSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVY
VSIHSLHKISRYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKG
FQYAPDSYLQNELESSFIYEDTPDQIKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAIR
AAFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVTVGYLNRFRTAKQKAETLKQLA
EGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIP
RTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEELIRDAISYEIQRNGQVFFINNRIE
NIKEIAGMIQRLVPNARVGIGHGQMEGAKLEELMLAFMNGEFDVLVATTIIESGLDVPNA
NTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDDARKRIQALEQFSELG
SGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEQND
IETKEYVKDLQLDTDFELLFPDEYINTVSERLLLYNELADIKDETSLLAYENKLIDRFGP
LPKQAISLLSSMKIKWIATRLGIEKLVMKQGKMIGYFVSDQQSNYYQSGRFHQVLQFVQK
QSALCKMKEKQTPNGLRLLLTFENVKSIRKALELMELMDK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaactatctattctatttacgacaattcgcctaaaacggagcaaatttcgacc
cttttagggcaaaataataccgcaaaaatacagctgtctggattggtgggatcttcgatt
tcatttctaattcgctcactttttaaaaaatcagaactcccttttgtattgattttaaat
gacaaagaagaagccgcttattttttgaacgatttggaacaaatggtgggcgaccaagat
gtattgttttatcccgcttcttttcgacgcccctatcaaatagaagaaactgacaatgtg
aatgtgttgcttcgtgccgaagttttaaatcgcatcaactcacgcaaaaaaccagctatt
attgtaagttatcctgaagcgctttttgaaaaagtggtcactcgaaaggaattggataaa
aacactttgaaagtcgctgtgggcgaccaaatttcgattgattttatcaatgaggtactg
tttgaatacgaattcaaaagagtggattttataacagaacccggcgaattttcggttcga
ggcggtatcgtagatgtgttttcgttttccaatgataatccgtaccgaatcgagtttttt
ggcaacgaagtagacagcattagaacctttgatgtggccacccaattgtcattggaacaa
caaaagaaaattgccattattccaaatgtagaaaataaatttttacaggaaaatcgcgaa
agttttttagactatatttctgaaaaaacggtcatttgtattcaaaataccgaaggatta
ttaagtcaattggacaagcaatttgccaaggctgaagaagcgtttgaaacactatctaag
gatatcaaacacgccacgccagagcaattatttttgaatcaagaacaatttgtgaaacgc
gcactgaatttttcggtggtggaattggattctaagccaatatttaaaacgatcaaaaag
ttcgattttcatacgcagccgcaaccctctttcaacaaacaatttgatttgttgttgaac
aatttgaacgacaatcattttaatggttacaaaaactatttgttctgttccaatgacaat
caagccaagcgttttcatgatatttttgaaaccttggatgaggcaaattcagagaatatt
cgtaagcaatacaataccgttgttttgcctttgtaccaaggatttattgacgaagaaaat
caaatcacctgctataccgatcatcagatttttgaacgctaccataaattcagcatcaaa
aatggctattccaaaaagcaaaacattaccctgaaagagctgacttcactttcggtagga
gattatgtaacgcatatcgatcacggaattggaaagtttggcggtttgcagaaaattcaa
gtcgaaggcaaaacacaagaagcgattaaattggtgtatgccgataatgatattgtgtat
gtgagtattcactctttgcacaaaatttcaagatacaatggcaaagacggcacgcctcct
aaaatttataaattagggtcgaatgcttggaaagttttaaaacaaaaaaccaaagcgcgc
gtcaaacatattgcattcaatttgattcagctttatgccaaaagacgtttggaaaaaggc
tttcaatatgcgccggatagttatttgcagaacgaattagaaagttcgtttatctacgaa
gatacgccggaccaaatcaaatcgactcaggaagttaaagccgacatggaaagcgaccga
cctatggatcgcttggtgtgtggcgatgtaggttttggaaaaacagaggtggccattcgt
gccgcttttaaggcggtggataacagcaaacaagttgctgttttggtacctacaactatt
ttggcttaccaacattatcgcactttttcggaacgattgaaagacatgcccgttacagtg
ggttatctgaaccgatttagaacggccaaacaaaaagcagaaaccctcaagcaattggcc
gaagggaaactagatattgttattggaacccatcagttagtaaacaaaaatgtggttttt
aaagaccttggcttattgattgtagacgaggaacaaaaatttggggtaaacgtcaaagac
aaactcaaaacaatcgctgccaatgtggataccttgacgttaacggctacacctattccg
agaaccttacaattctcgttgatggctgcgcgtgatttatcggtaatcactacgccaccg
ccgaatcgctatcctattgaaaccaatgtggtcggcttcaatgaagagttgattcgcgat
gcgatttcctatgaaattcagcgcaacggccaagtcttttttatcaataaccgcatagaa
aacatcaaagaaattgctggaatgattcagcgattagtgcccaacgcccgcgtaggaatt
ggccacggccaaatggaaggcgctaaacttgaagaactgatgctggcttttatgaacggc
gagtttgatgttttggtagcgactaccattattgaaagtggtttggatgtgccgaatgcc
aatacgatttttatcaacaatgccaataattttggattgtctgatttgcatcaaatgcga
ggtcgagtaggccgaagcaacaaaaaagcgttttgctatttcatttgtccaccttattct
gccatgacggatgacgctcgaaaacgaattcaagccttagaacaatttagtgaactaggt
agcggatttaatattgctatgaaagacttggaaattcgtggcgcaggtgatttgttagga
ggagaacaaagtggtttcatcaacgaaattggttttgacacctatcaaaaaattatgaat
gaagctatcgaagagctgaaggaaaacgaattcaaggatctgtatcctgagcaaaatgat
attgaaaccaaagaatatgtcaaagacttgcaattggataccgattttgaattattgttc
ccagatgaatatattaatacggtttcggaacgattgctattgtacaatgagttggctgac
atcaaagacgaaacatcacttttggcctatgaaaacaaattgattgaccgttttggtccg
ttgccaaaacaagcgatttctttattgagcagcatgaaaattaaatggattgccacgcga
ttaggaatcgaaaagctggtcatgaaacaaggcaaaatgattgggtattttgtgtctgat
caacaatcgaattactaccaatcaggacgttttcatcaagtattacagtttgtgcaaaag
caaagtgcgttgtgcaaaatgaaagaaaaacaaacgcctaacggattgcgattgttgtta
acttttgaaaacgtaaaatcaattcgcaaagcattagagttgatggaattgatggacaaa
tag
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