KEGG   Falsirhodobacter algicola: GR316_03905
Entry
GR316_03905       CDS       T07373                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fap  Falsirhodobacter algicola
Pathway
fap03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GR316_03905 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fap03400]
    GR316_03905 (ligD)
Enzymes [BR:fap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GR316_03905 (ligD)
DNA repair and recombination proteins [BR:fap03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GR316_03905 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase SSL_N
Other DBs
NCBI-ProteinID: QUS35487
UniProt: A0A8J8SKK0
LinkDB
Position
768892..771330
AA seq 812 aa
MDPLDTYRRMRDFAATPEPSGTGGVSAGPALRYGVQMHDATRLHWDLRLEWRGALLSWAV
TRGPSLDPADKRLAVRTEDHPLDYLTFEGTIPKGQYGAGTVMLWDIGWWQPYHDVADGLA
KGHLHFALHGRRAGGGYSLIRMKGKRQGDAKRENWLLIKEDDAAADPEAKHFAAPDARSV
ATNRTLEQIGNNAPALPFGPRRRHAMPAFHEPQLATAVDTPPTGAEWLHEVKLDGYRALI
GLGKDGVRIFTRSGLDWSDRFAELLPPLADLPCDAALIDAEIVAGAGLQGFSALQAAIKA
GGPFQVYAFDLLSLNGASLTGQPLTKRRAALERLLAKAPPRGPVRPSPVLGGAAQDALAA
ICAAGGEGLVSKLAQAPYRSGRGTSWQKTKCIRRAEFLICGWMPSDKRGRTFASLLLATA
EGGGLVYRGKVGTGFDTVAQEDIMARLAPLARKSPPLSAPRAEVRGAKWVDPQLAAEILH
AELTSDGRLRHARFVALREDKAPEDIALDPPVEVQMDHGTRPRIAGIGISHPDRLLFPKP
RITKQALAEYHEAMADRLLPTLKDRPAALLRLPEGLDGERFFQKHPGKGFPDAIRSVRVP
QADGSAADHMCITDTAGLVAAVQMGTVEFHPWGARRDRLDRPERLVFDLDPDEALGFARV
REAALHVRDRLADLGLPSWAMVTGGKGVHVIVPLRRTASWQTAKIFAQLFATLLAEDAPG
AYTASMSKAQRKGRIFVDWLRNERGATAVAPFSVRARPGAPVAVPVAWDELRRLRRANGF
SMKAAQTRSWADLDVPEPAGLNKDVLARLERK
NT seq 2439 nt   +upstreamnt  +downstreamnt
atggacccgctggacacctaccgccggatgcgcgacttcgccgcgacgccggagccttcg
ggcacgggtggggtgtccgcggggccagccctgcgctacggcgttcagatgcatgatgca
acgcgcctgcattgggatctgcggctggaatggcgcggcgcccttctgagctgggccgtg
acgcgggggccgtcgctggatccggcagacaaacgccttgccgtgcggaccgaggatcac
cccctcgattacctgaccttcgaagggaccatccccaagggccaatatggcgccggaacc
gtgatgctgtgggatatcggctggtggcagccctatcacgacgtggccgatgggctggcc
aaggggcatctgcatttcgcgctgcatgggcggcgcgcggggggcgggtattccctgatc
cgcatgaagggaaagcggcagggcgatgccaagcgcgagaattggctgttgatcaaggag
gacgatgccgcagcggaccccgaggccaagcatttcgccgcgccggatgcccgcagtgtg
gccacgaaccgcacattggaacagatagggaacaacgccccggccctgcccttcggcccc
agacgtcgccatgcgatgcccgcctttcacgaaccgcaacttgccaccgccgtcgatacg
ccccccacgggtgcggaatggctgcacgaggtgaagctcgatggctatcgcgcgctgatc
ggccttggaaaggacggggtgcgcatcttcacgcgcagcggcctcgattggtcggaccgc
tttgccgaactgctgcccccgctggccgacctgccctgcgatgccgccctgatcgacgcg
gagatcgtggccggtgccggattgcaggggttttccgcattgcaggccgcgatcaaggcg
ggcggtccgtttcaggtctatgccttcgatcttctgtcgctgaacggggcctccctgacc
ggccaaccgctgacgaaacgccgcgcagccttggagcgtcttttggcgaaggctccgccc
cgtgggccggttcgcccgtcgcccgtccttggcggcgcggcacaggacgcgctggccgcc
atctgcgcggcaggcggcgaagggctagtctcgaagctggcgcaggccccctatcgcagc
gggcgcggcacgtcatggcaaaagacgaaatgcatccgccgggcggagttcctgatctgc
ggctggatgccttcggacaaacgcgggcgcaccttcgcctcgctgctcctcgccacggcc
gaagggggcggcctcgtctatcgcggcaaggtcggaacggggttcgacacggtcgcgcag
gaggacatcatggcccgcctcgccccccttgcccgcaaaagcccgcccctcagcgccccg
agggccgaggtgcggggcgcgaaatgggtcgatccgcagcttgcggccgaaatcctgcat
gccgaactgacgagcgatggccgcttgcgccatgcccgcttcgttgccctgcgcgaggac
aaagccccagaagacatcgccctcgatccccccgtggaggttcagatggatcacggcacc
cgcccccggatcgccggcatcggcatcagccacccagaccgcctgctgttccccaaaccc
cgcatcacgaaacaggcccttgccgaatatcacgaggcgatggccgaccgcctccttccc
accctcaaggaccgccccgccgcccttttgcgcctgcccgaggggctggacggggaacgg
ttctttcagaagcatccgggcaagggctttcccgatgccatccgcagcgtccgcgtgccc
caagccgatggaagcgccgccgaccatatgtgcattaccgatacggcggggctcgtggcc
gccgttcagatgggcaccgtggagtttcacccatggggcgcccggcgcgatcggctggac
cggcccgagcggctggtcttcgacctcgaccccgacgaagcgctcggtttcgcccgcgtc
cgcgaggccgcgctgcatgtgcgggaccggctggccgatctggggctgccctcatgggcg
atggtgacggggggcaagggggtgcatgtcatcgttcccctgcgccgcaccgcaagctgg
cagacggcgaagatcttcgcccagcttttcgcgacgcttctggccgaggatgctccgggc
gcctacaccgccagcatgtcgaaggcccagcgcaaggggcggatcttcgtcgactggctg
cggaacgaacgtggggcgacggcggtagcccccttctcggtccgggcacggcccggcgcg
ccggtcgcggtccccgtcgcatgggatgaattgcgtcgtctgcgccgggcgaacgggttt
tcgatgaaggccgcgcaaacgcgcagctgggccgatctggacgtgccggagcctgcgggg
ctgaacaaggacgttctggcgcggctcgaacgaaaatag

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