Flavobacterium arcticum: DVK85_06315
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Entry
DVK85_06315 CDS
T05621
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fat
Flavobacterium arcticum
Pathway
fat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVK85_06315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fat03400
]
DVK85_06315 (mfd)
Enzymes [BR:
fat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVK85_06315 (mfd)
DNA repair and recombination proteins [BR:
fat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVK85_06315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AXG73873
UniProt:
A0A345HBB3
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All DBs
Position
1385082..1388444
Genome browser
AA seq
1120 aa
AA seq
DB search
MKPEITTIYQESTKVKQIATALQQRESKLHIKGLIGSSLSFIIDPLFQEAGLPFLLVFKD
KEEAAYYLNDLEKLVGEQDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAII
VSYTEALFEKVVTRKELDKNTLKVAVGDQVSIDFINEVLFEYEFRRVDFVTEPGEFSVRG
GIVDVFSFSNDNPYRIEFFGNEVDSIRTFDVETQLSLEKNKQITVIPNVENKFLQENRQS
FLEYINQKTVVFIQNTEAMLSQLDVLYSKAVEAFGKLSEDIKHAAPEELFLNQASFLKKA
LDFTVVDLATKPVFKIDKAFEFHIQPQPSFNKQFDLLLNNLNENQANGFKNYIFCSNEAQ
AARFHDIFESIDEENSEDIRKQYKTIVFPIYEGFIDEENQIACYTDHQIFERYHRFNIKN
GYSKKQTITLKELSSLSVGDYVTHIDHGIGKFGGLQKIEVEGKKQEAIKLVYADNDIVYV
SIHSLHKISKYNGKDGTPPKIYKLGSSAWKTLKNKTKARVKHIAFNLIKLYAKRRLEKGF
QYAPDSYMQAELESSFIYEDTPDQVTATRDVKADMENERPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAILVPTTILAFQHHKTFSERLKDMPVTIGYLNRFRTAKQKAETLKELAE
GKLDIIIGTHQLTSKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIESHVVGFNEEIIRDAISYEIQRGGQVFFINNRIEN
IKEVAGMIQRLVPGAKVGVGHGQMEGKKLEELMLSFMDGDFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARKRIQALEQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKYLYEEDTEK
PVQREYVKEIQIDTDFELLFPDEYVNNITERLNLYNELSAIKTEEDLNKFEQKLIDRFGA
LPKPALALMTSMRIKWLATKMGIEKLVLKQSKMIGYFVSDQQSDYYQSGTFHKVLQFVQK
QPSLSRMKEKQTKNGLRLLLTFDNVKTLPKALHLLEMVFE
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacccgaaataacaactatataccaagagtcgactaaagtaaaacaaattgcaact
gcgctacaacagcgcgaaagtaagttgcatataaaaggacttataggctcgtcgttatca
tttatcatcgacccgctatttcaggaagcagggcttccgttcttgcttgtttttaaagac
aaagaagaagccgcatattaccttaatgacctcgaaaaactagtgggcgagcaagatgta
ttgttctaccctggttcttaccgtcgtccgtaccaaatagaggaaacggataatgcgaat
gtgctattgcgtgcggaagtactgaatcgtatcaattcgcgcaagaaaccagcaattata
gtatcatacaccgaggcgctttttgaaaaagtggtaacccgaaaggagcttgataagaat
acgctaaaagtagcagtaggcgaccaagtgagtatcgatttcattaacgaagtgttgttc
gagtacgaatttcgtagagtagattttgtaactgagcctggagagttctctgtacgaggt
ggtattgtcgatgtgttttcatttagtaacgataacccttaccgtatagagttttttggt
aatgaggtcgatagcatccgtacatttgatgtagaaacgcaattatcgttagagaagaat
aagcaaataacagttatcccaaatgttgagaacaaatttttgcaggaaaacaggcagagt
tttttagagtacattaatcaaaaaactgttgtctttatccagaataccgaggctatgcta
tcacagctagacgtgctgtatagtaaggctgtcgaagcttttggtaaactgtctgaagat
attaaacatgcagctcccgaggaattgtttcttaatcaggcgtcattccttaaaaaagca
ttagatttcacagtagtagatcttgccacaaaacctgtctttaaaatagataaagcattc
gagtttcatatacaaccacaaccatcgtttaacaagcaattcgacttattgcttaataac
ttgaacgagaaccaagctaatggttttaaaaactatatattctgctcgaacgaagcacaa
gcagcccgttttcatgatatatttgagagtattgacgaagagaatagcgaagatatacgt
aagcagtataaaacaatagtattccctatatatgaaggttttatcgatgaagaaaaccaa
atagcctgctatactgaccatcagatatttgaacgctaccaccgatttaatattaagaat
ggttactctaaaaaacaaaccattactctaaaagaacttagctcgctatcggtaggcgat
tatgtaacccatatcgatcatggtattggtaagtttggcggattacaaaaaatagaagta
gagggtaaaaaacaagaagctataaaactggtatatgctgataatgatattgtatatgta
agcatacactcgttacacaaaatatcgaaatataacggtaaagacggtacaccgcccaag
atatacaaactaggcagtagtgcatggaaaacccttaaaaataagaccaaggcaagagtt
aaacatattgcctttaacttaattaaactatatgctaaacgtagactcgaaaaaggtttt
cagtatgcgccagatagttatatgcaagcagagttagagtcatcttttatatacgaagac
acgcctgatcaagtaacagcaactcgtgatgtaaaagccgatatggaaaacgagcgccct
atggataggctagtgtgtggtgatgtgggctttggtaaaacagaagttgctattcgtgct
gcttttaaagcggtagataacggtaaacaagtagcgatactggtgcccactactatattg
gcatttcagcatcataaaacatttagcgaaaggctgaaagatatgccagttaccattggt
taccttaaccgtttccgtacggcaaagcaaaaagcagaaacgctgaaagaacttgccgaa
ggtaaactcgatatcattattggtacgcaccagcttaccagtaaaaatgttgtgtttaaa
gatttaggtttattgatagtagatgaggagcaaaaatttggcgtaaatgtaaaagataaa
ctaaaaaccattgcagcaaatgtagacacacttacgcttactgctacacctatacccaga
acattacagttttcattgatggcagcgcgcgacctttcggtaataactacacctccgccc
aaccgttacccaatagaaagtcatgtggtaggttttaatgaagaaattattcgcgatgct
atatcgtatgaaatacagcgtggagggcaagtattctttataaataaccgtattgaaaat
attaaagaagttgccggaatgatacaacgtttagtaccgggagcaaaagtaggagtaggg
cacgggcaaatggaaggtaagaaactggaagaactgatgctttcctttatggatggcgat
tttgacgtgctggttgctaccactattatagagagcggactggatgtacctaatgctaat
actatatttataaacaatgccaataacttcggacttagtgacctgcaccaaatgcgtgga
cgtgtaggacgtagtaacaaaaaagctttttgctattttataacaccgccatatagcgct
atgacagaggatgcccgtaaaagaatacaggcactagagcagtttagcgaactgggtagt
ggttttaatatcgctatgaaagaccttgagatacgcggagcaggagacctgctaggtgga
gaacaaagtggctttattaacgagataggctttgatacctaccaaaagataatgaatgag
gctatagacgagttgaaagagaacgagtttaaatacctttatgaagaagataccgaaaaa
cctgtacaacgggaatatgtaaaagagatacagatagatacagactttgagttactattc
cctgatgagtatgtaaataatattaccgaaaggcttaacctgtataacgagcttagtgct
ataaaaacagaagaggacttaaataagtttgaacaaaaactgattgaccgttttggagca
ttgccaaaaccagcacttgcgttaatgacaagtatgcgcattaagtggctagctaccaaa
atgggtatagaaaaactggtgttaaagcaaagtaaaatgatagggtattttgtgagcgac
cagcagagtgattattaccagagtgggactttccacaaggttttgcagtttgtacaaaag
caaccatcactaagccgtatgaaggaaaaacaaactaaaaacgggctgcgattactgctt
acatttgataatgtaaaaactttacctaaagcattacatttactagaaatggtgtttgag
tag
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