Fulvitalea axinellae: FUAX_36080
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Entry
FUAX_36080 CDS
T09748
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fax
Fulvitalea axinellae
Pathway
fax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FUAX_36080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fax03400
]
FUAX_36080 (mfd)
Enzymes [BR:
fax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FUAX_36080 (mfd)
DNA repair and recombination proteins [BR:
fax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FUAX_36080 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDD11176
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All DBs
Position
complement(4596730..4600095)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSQENSENTLIRRYAEDPELLSFAHALREDSKNTAVKGLVGSMDSCAAVALASVFSDMRH
VFVLHDREEAAYFHSDLRGLGLKDTLFFPSSAKRPYRPEETENANVLQRAEVLNELNQRL
DRGWLLVTYPEALSEKVINKRSLKTNTYTVKEGDEIDVEFLCEMLVDYGFERSDFVYEAG
QFAVRGGIIDIYSYSADFPFRIELFGDEVESVRSFDPETQLSVESVGRFDLIPDVQTKLT
EERRESFLDFIPESSVLWFKDYQLTLDVLEKSFEKAGEKFEEITAKHEAQVVLSPEDLYE
TADAFAKKSLDFRRVEFGNRFYLDHSKVFERQAEAQPSFNKNFELLAENLDENSAKGLDT
FLVSDSEKQLERLRKIFEEISPNTKFEIGRNDLRAGFVDKTQGVACYTDHQIFERFHRFK
TKEKHTRSRAMTLKELRSLKTGDFVTHVDHGIGRFAGLELVDVNGRKQESIRLIYKGDDL
LYVSLHALHKVSKYSGKEGVPPAMSKLGSQEWNNKKKRAKSKVMDIADDLIKLYARRKNA
PGFAFPTDDFMQAELESSFLYEDTPDQAKATKEVKADMELAHPMDRLVCGDVGFGKTEIA
IRAAFKSVASGKQVAVLVPTTILAMQHHRTFSERLSNFPVRVEYINRFKSAKQVREILTD
SAEGKVDILIGTHRLANKDVKFKDLGLMVIDEEQKFGVKVKEKLKEMRVDVDALTLTATP
IPRTLHFSLMGARDLSVISTPPPNRQPVTTEIHTFGEAVVRDAVSYELRRGGQVFFVHNR
VEDIESIGALIKRLVPDARIAVAHGQMEGAKLERVMVDFIDGAYDVLVSTNIIESGLDIP
NANTIVINQAHMFGLSDLHQMRGRVGRSNRKAFCYLLSPPVSVMTGEARKRLSTLEEFSD
LGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVKELKETKFKELFANE
VKKEEKPKPFVEDCNVETDWELLVPEDYVSNTAERLGLYTRLDKIKEKDKLDEFVKELKD
RFGKLPRPVEDLVKTIRVRWQAQSMGFERLTMKGGVMRGYFVSEKHDTYFQSPVFGKILS
FVQKNPKKSKLKELKGRPMLVVQEVTDVDEALGLFENIQAD
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagaaaattccgaaaacaccctgatccggcgctacgccgaagatcccgaatta
ttgtcgtttgctcatgctctccgtgaagattctaaaaatacggctgtcaaaggcttggtg
ggatcgatggacagttgcgccgccgtggctttggcttcggttttttcggatatgaggcac
gtcttcgtgcttcatgacagggaagaggccgcttactttcattccgatttgcgagggttg
gggctgaaagatacgctgttttttccgtcatctgccaaaaggccttaccggccggaggaa
accgaaaacgccaatgtactgcaaagggcggaagtgctgaacgaactgaaccaacgcctt
gacaggggttggttgttggtcacttatccggaagcgttgtctgagaaagtgatcaacaaa
aggtcgcttaagacgaacacttacaccgtaaaagaaggtgacgaaatcgatgtcgaattc
ctttgcgagatgttggtcgattatggtttcgaacggtcggattttgtttacgaagccgga
caattcgctgtcaggggtggcattatcgatatttattcctactcggcggactttcctttc
cgtatcgaacttttcggggacgaagtggaaagcgtccggagttttgatccggaaacacag
ctttcggtcgaatctgtcgggcgttttgatttgatccctgacgttcagactaaacttacc
gaagagcgcagggaatcgtttctggattttatcccggaatcctcagtgctttggttcaaa
gattatcagctgacgctggatgtgctggaaaaaagctttgagaaagcgggagaaaaattc
gaggagataaccgccaagcacgaggctcaggtcgtgttgtctccggaagacctttacgaa
accgctgatgccttcgccaaaaaatcccttgatttcaggcgggtggagttcggtaaccgg
ttttatctggatcattccaaagttttcgaaaggcaagcggaagctcagccgtctttcaat
aagaattttgagcttttggccgaaaatctggatgaaaacagcgccaaaggattggatacg
tttctggtttcggactcggaaaaacaactggaaagattgcgcaaaatcttcgaggaaata
agtcccaataccaaatttgaaatcgggcggaatgaccttcgggcaggttttgtggataaa
acccaaggagtagcctgttatactgatcatcagatttttgaaagattccatagatttaaa
accaaagaaaaacatactcgctcccgggcaatgacgctcaaagagcttcgttcgctgaaa
accggcgatttcgtgacgcatgtcgatcacgggatcgggcggttcgcagggcttgaactg
gtggatgtgaacggcagaaagcaggaatccatccgcctaatttataaaggtgacgatctg
ctttatgtgagtctgcacgcattgcataaagtgtccaaatattcgggcaaagagggcgtg
cctccggcgatgagcaagcttggctcccaagaatggaacaataagaaaaaacgagccaag
agcaaggtcatggacattgccgatgatctgattaagctatacgcccgacgcaagaacgcc
cccggctttgcgtttcccaccgacgattttatgcaggccgagttggagtcgtcgtttttg
tatgaggacactccggaccaagccaaagccacaaaggaagtgaaagccgatatggaattg
gcccacccaatggacaggttggtttgcggagatgtaggctttggtaagacggaaatcgca
atccgggccgccttcaagtctgtggcctccggcaaacaggttgccgttctggttccgacg
actatcctggctatgcaacatcaccgtactttctccgaacggttatctaattttcccgtg
agggtggaatacattaacaggtttaagtccgccaagcaagttcgggaaatcttgaccgat
tctgcggaaggtaaggtcgatatacttatcggaacgcaccgcttggctaacaaagacgtc
aagtttaaggatttgggtctgatggtaattgacgaagaacagaagtttggagtcaaagta
aaggaaaagctcaaggagatgcgggtggatgtggacgccctgacgctcacggccactccg
attccacgaacgttacacttttcgctaatgggcgcccgcgaccttagcgttatttccact
ccgccaccaaaccgtcagcccgttactacggagattcacacttttggggaagcggttgtc
agagatgccgtcagctatgagttgagaaggggcggacaagtctttttcgtacataatcgc
gtggaggatatcgagtcaataggggcgctgatcaaacgtctcgtgcctgatgctcggata
gcggtggcccatggccaaatggaaggggcgaagttggagcgtgtgatggtcgattttatc
gatggcgcatacgatgtgttagtttcgacaaatatcatcgagtccggtttggatattccg
aacgccaatacgattgtgatcaaccaagcgcacatgttcggtttgtccgatcttcaccag
atgcgcgggcgggtcgggcgttcaaaccgtaaggccttttgttacctgctctcaccgccg
gtttctgttatgactggagaggctagaaaaaggctcagtacgctagaagagttttccgat
ctcggtgacggattcaaagtggcgatgcgcgacttggatatcaggggcgccggaaatttg
ctcggagccgaacaaagtggatttattactgatttaggcttcgaaatgtatcataaaata
ttggacgaagccgttaaagaattaaaagaaaccaaattcaaagagctgtttgccaatgag
gtgaaaaaggaagagaagccgaaaccttttgtggaggattgcaacgtcgagacggattgg
gagcttttagttccagaggattacgtttccaatacggccgaacgcttgggactttacacg
cgattagataaaatcaaggaaaaagacaagttggatgagtttgtaaaagaacttaaagac
cgtttcggaaagttgcctaggcctgtggaagatttggtgaaaacaattcgggtcaggtgg
caagcccagtcgatgggttttgaaaggctcacgatgaaaggcggagtgatgcgaggatat
ttcgtttcggaaaaacatgacacgtatttccaatcgcctgtttttggaaagattttgtct
tttgttcaaaagaatccaaaaaagtcaaaattaaaagagttgaaagggcgcccaatgttg
gttgtccaagaggtgaccgacgtagatgaggcattaggcctttttgaaaatatacaagcg
gattga
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