Flavobacterium azooxidireducens: M0M57_06175
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Entry
M0M57_06175 CDS
T08660
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
faz
Flavobacterium azooxidireducens
Pathway
faz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
faz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M0M57_06175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
faz03400
]
M0M57_06175 (mfd)
Enzymes [BR:
faz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0M57_06175 (mfd)
DNA repair and recombination proteins [BR:
faz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M0M57_06175 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UPQ80420
LinkDB
All DBs
Position
complement(1395130..1398492)
Genome browser
AA seq
1120 aa
AA seq
DB search
MNVSTISSAYNSSAKIIQLAENITVPENKIQIKGLIGSSLSFVIQTLFQKTELPFLLLFN
DKEEAVYYLNDLENLINDQDVLFYPSSYRRPYQIEETDNANILLRAEVLNRINSRKKPSI
IVTYPEALFEKVVTRKELDKNTLKVAVADQISIDFINEVLFEYNFKRVDFVSEPGEFSVR
GGIIDVFSFSNDNPYRIEFFGNEVDSIRTFDVETQLSLEKQKKISIIPNVENKFLQENRE
SFLNYINPKTVLFVQETEMVLSQFDKLFDKATEAFGKLSGDIKHASPDELFINQSSFVKK
ALDFSIVEVGLKSIFKSEKTIEFLTKPQPSFNKQFDLLLNDLNENHFNGIKNYLFCSNEN
QANRFHDIFESIDEENHENIRKQYKTIVFPLFQGFIDEENQLACYTDHQIFERYHKFSIK
NGYSKKQTITLKELTQLSVGDYVTHIDHGIGKFGGLQKIQVEGKMQEAIKLVYADNDIVY
VSIHSLHKISKYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKG
FACAPDSYLQKELESSFIYEDTPDQITATQDVKNDMERDRPMDRLVCGDVGFGKTEVAIR
AAFKAVDNGKQVAILVPTTILAYQHYRTFTERLKDMPVTVNYLNRFRTAKQKSETLKGLA
EGKVDIIIGTHQLVSKDVKFKELGLLIIDEEQKFGVNVKDKLKTISATVDTLTLTATPIP
RTLQFSLMAARDLSVITTPPPNRYPIESHVVGFNEELIRDAISYEIQRNGQVFFINNRIE
NIKEVAGMIQRLVPDARVGIGHGQLDGKKLEELMLGFMNGDFDVLVATTIIESGLDVPNA
NTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPQSVMTEDARKRINALTQFSELG
SGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKELYQEEND
IETKEFVKDLQIDTDFELLFPDDYINSVNERLNLYNELGSVKDEEGLLAYEQKLIDRFGS
LPKEAEALLNSIRIKWIATRLGIEKLIMKQGKMIGYFVGDQQSDYYQSSRFRKVLQFVQL
HGNLCKMKEKETKSGLRLLLTFENVKSIRKALEFMELMGR
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgtttcaactatttcttctgcttataattcttctgctaaaattattcaattagct
gaaaacattaccgttccagaaaataaaattcaaatcaaaggattaattggttcgtcgttg
tcgtttgttattcaaactttatttcaaaaaacagaattaccttttttattactttttaat
gataaagaagaagccgtttattatttgaatgatttggaaaacctcatcaacgatcaagat
gtgcttttttatccgagttcgtatcgacgaccttatcaaattgaagaaacagataatgct
aatattttgcttcgggctgaagtgttaaaccgcatcaattcccgcaaaaaaccatcgatt
attgttacttatccggaagctctttttgaaaaagtggttactcgaaaagaattagataaa
aacacgttgaaagtcgctgttgccgatcaaatttcgattgattttatcaacgaagtattg
tttgaatataattttaaacgcgttgattttgtatcagaaccgggcgagttttcggttcgt
ggtggaatcatcgatgtcttttcattttcaaatgacaatccgtaccgaattgaatttttt
ggcaatgaagtcgatagcatccgaacatttgatgtagaaacgcaactttcccttgaaaaa
cagaagaaaatatccatcattcctaacgtagaaaataaatttttacaggaaaatagagaa
agtttcctcaattatatcaatccaaaaaccgttctttttgttcaggaaacagaaatggtt
ttgagtcaatttgataaattattcgataaagcaacagaagccttcggaaaactttccggt
gacattaaacacgcttcaccagatgaacttttcatcaatcaatcttcttttgtaaaaaaa
gcacttgatttttctattgttgaagttggattgaaatcgatttttaaatccgaaaaaacg
attgaatttcttaccaaaccacaaccatctttcaacaaacaatttgatttattgttgaat
gatttgaatgaaaatcactttaacggaatcaaaaattacttgttttgttccaatgaaaat
caagctaatcgctttcacgatatttttgaaagtattgatgaagaaaatcacgaaaacatc
cgaaaacaatacaaaaccattgtttttccgctttttcaaggttttattgacgaagaaaat
caattagcttgctacaccgatcatcagatttttgaacgttatcataaattcagcatcaaa
aacgggtattccaaaaagcagaccattacgttaaaggaattaacccaactttctgtgggt
gattatgtgacgcacattgaccacggaatcggaaaatttgggggtttacaaaaaattcag
gtggaaggcaaaatgcaagaagccattaaattggtgtacgcagacaatgatattgtgtat
gtgagcattcattcgctacacaaaatttcaaaatacaacggaaaagacggaacacctcca
aaaatttacaaattaggttcgaatgcgtggaaagttttaaaacaaaaaaccaaagctcgc
gtcaaacatattgcgttcaacttgattcaattgtatgccaaaagacgtttggaaaaaggt
tttgcctgtgcaccggatagttatttgcaaaaagaattggaaagttcgtttatttatgaa
gatacgcccgaccaaattacagctacgcaagatgtaaaaaacgatatggaacgtgatcgt
ccgatggatcgactagtttgtggcgatgttggttttggaaaaacagaagtcgccattcgt
gctgcatttaaagctgttgacaacggaaaacaagtcgctattttggttccaactacgatt
ttggcttatcaacattatcgaacatttaccgaacgtttgaaagatatgccggttacggtg
aattatttaaatcgatttagaaccgcgaaacaaaaaagcgaaacactaaaaggtttagca
gaaggaaaagtagatatcatcatcggaacgcatcaattggtgagtaaagatgtgaagttt
aaagaattaggattattgattattgatgaagaacagaaatttggagtgaatgtaaaagat
aaactcaaaacgatttctgctacggttgatacattgacgttgaccgcaactccgattccg
agaacgttgcaattttcgttaatggcagcaagggatttatcggtcattacaactccacca
ccgaatcgatatccaatcgaaagtcatgtggttgggtttaatgaagaactgattcgagat
gctatttcgtatgaaattcagcgaaatggtcaagtttttttcatcaataatcgtatcgaa
aatattaaagaagtagccggaatgattcaacggcttgttcccgatgctcgtgttggcatt
ggtcacggacaattggatggaaaaaagttagaagaattaatgcttggttttatgaacggt
gattttgatgtgttggttgccaccaccattattgaaagcggtttagatgtaccaaacgcc
aatacgatttttatcaacaatgccaataattttggtctatccgatttgcatcaaatgcgt
ggtcgtgtgggtcgaagcaataaaaaagcgttttgttattttatcacaccgccccaatca
gtgatgacggaagatgcaagaaaacgaatcaatgcattgacacaatttagcgaattggga
agtggtttcaacattgcgatgaaagatttagaaattcgtggagccggtgatttattgggt
ggcgaacaaagcggttttatcaatgaaatcggttttgacacgtatcaaaaaattatgaac
gaagccatcgaagaattaaaagaaaacgaattcaaagaattatatcaggaagaaaatgat
attgaaaccaaagaatttgtgaaagatcttcaaattgatactgattttgaattattgttt
ccggatgactacatcaacagtgtcaacgagcgattaaatttatacaacgaacttggaagt
gtaaaagacgaagaaggtttattagcctacgaacaaaaactaattgaccgttttggctca
ttgccaaaagaagcagaagcgttgctgaacagcatccgaattaaatggattgccacgcga
ttaggcatcgaaaaactcattatgaaacaaggtaaaatgattggttattttgtgggcgat
caacaaagtgattattatcaatcttctcgatttagaaaggtgttgcagtttgttcaattg
cacggaaacctttgcaaaatgaaagagaaagaaaccaaaagcggcttgcgtttgttgttg
acttttgagaatgtaaaatcgattaggaaggcgttggaatttatggagttgatgggacgt
taa
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