Flavobacteriaceae bacterium 3519-10: FIC_00895
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Entry
FIC_00895 CDS
T00953
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FIC_00895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fba03400
]
FIC_00895
Enzymes [BR:
fba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FIC_00895
DNA repair and recombination proteins [BR:
fba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FIC_00895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACU07347
UniProt:
C6X4K9
LinkDB
All DBs
Position
926922..929612
Genome browser
AA seq
896 aa
AA seq
DB search
MALEQYRNKRSEHKTPEPFGGKPSGKELKFVVQKHHASHLHYDFRLEMDGVLKSWAVPKG
PSLDPKVKRLAMMVEDHPYDYRNFEGSIPKGQYGGGTVIVWDEGTYEHDDASESVKKQEK
SLLADLKSGKLKFRLNGHKLKGEFALVKAYGRGEDSWLLMKLNDEFATAEDITLMDESVI
SNKTIDEMAEAPDKIYGQKSEKKKPAISKKATPKKSAKTKNAQIAEVIEEPTADISKILK
AAPQQKFYTSVEPMLATLVDQPFDSDEWIYEVKWDGYRAVAFMNEGEVEMKSRNDKSFNE
KFYPIYDELKKMNINAILDGEVVVLGTEGKANFGALQNWRSESDGDLVFYVFDLLWYEGK
DLKSLPLTTRKQILDEILPKSETVMKSEVFETSGIEFLEAAKKMDLEGIMAKRKDSRYHI
KNRTKDWLKIKANKRQEVVIGGYTLNDDSRKLFSSLLVGVYEGTKLVYTGKVGTGFNAKC
QREMMDMFAPLVTDKPPFDKEPDVNKPSRFRPDPPHATVTWLKPKLLCEVSFTELTTDGI
MRHPSFQGMRTDKSAKTVTLETEQPVAEIVKDDTMIISTRKKADRKTLLNPKDKSQVKKV
NGHELKFTNLDKIFWPDEKLTKRDLINYYYQVAPYILPYLKGRPQSMNRYPDGIEGESFY
FKDVTGKAPDWAETLGYVSESDGRERRYLVGKDEATLLFMANLGCIEMNPWNSTIKKPDH
PTFCIIDLDPDENTFDQVIETAQVTKQLLDSMGAPSYCKTSGSTGLHIYIPLGNKYTYEQ
SKEFARALVTLVHQELPEITSIERIIKKRKGKMYLDFLQNRPHATIAAAYSVRPKPGATV
SMPLHWDEVKKGLKMKDFTMQNALERIKSEGDIFKPVLGKGIDLEKVLRKFEESRK
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggctctggaacagtaccgcaataaaagatctgaacataaaacacccgaaccatttggc
ggcaaaccttcaggaaaggaacttaaatttgtcgtacagaagcatcacgcttcacatctt
cattacgatttccggctcgaaatggatggggtgctcaaaagttgggcggtaccgaaaggg
ccgtcgctcgatccgaaggtcaaacgtctggcgatgatggttgaggatcatccttatgat
taccgcaacttcgagggctcgattccgaagggacagtatggaggtggaaccgtaattgtg
tgggatgaaggcacctacgaacatgacgatgcatccgaaagtgttaagaaacaggaaaaa
tcgctgcttgcagatttgaagtcgggtaaacttaagttccggctcaacgggcataagctc
aaaggcgaatttgcacttgtaaaagcctacggacgcggagaagatagctggctgctcatg
aaacttaatgacgaatttgcaactgctgaagacattactttaatggatgagtccgttatt
tcaaataaaacaatcgacgaaatggccgaagcaccggataaaatttatggccagaaatcc
gagaaaaaaaaacctgcaatttcaaaaaaagctactccgaaaaagtccgcgaaaacaaag
aatgcacaaatcgcagaagtaatagaagaacccacggcagatatctccaaaattttaaag
gccgcacctcaacagaaattttacaccagcgttgaacctatgctcgcaaccctcgttgat
cagcctttcgacagtgacgaatggatttacgaggtgaaatgggacggttaccgcgctgta
gcgttcatgaatgaaggcgaagtggaaatgaaatcgcgcaacgataagagtttcaatgaa
aagttctatccgatttacgacgagcttaaaaagatgaatattaacgcaatcctcgatggt
gaagtagtggtactgggaactgagggcaaggctaactttggcgcgttacaaaactggcgc
agcgaatcggatggcgacctcgttttttatgtgttcgatctcctgtggtatgaaggcaaa
gatctgaagtcactaccactcacaacccgcaagcagattctggatgaaattctgcctaaa
agtgaaaccgtaatgaaaagtgaagttttcgaaacttcaggcattgagtttctcgaagcc
gccaaaaagatggatctcgaaggcatcatggccaaacgaaaagacagtcgctaccacata
aaaaaccgcacaaaagactggctcaagattaaagccaacaaacgccaggaagtcgtgatc
ggcggttatacgctcaacgatgattcacggaaactcttcagcagccttctggtaggcgtt
tacgagggtacgaaattagtttatacgggcaaagttgggacaggttttaatgcaaaatgc
cagcgcgagatgatggatatgttcgccccgcttgttactgataaacctccgttcgataaa
gaacccgacgtcaacaaaccttcacgtttccgtccggatccacctcacgccacagtcaca
tggcttaaacccaaacttctttgcgaagtgagttttactgaattgacgaccgacggcatc
atgcggcatccgtcattccagggaatgcgcaccgataaaagcgccaaaaccgtaacactc
gagaccgagcagcccgttgcagaaattgtaaaagacgacaccatgattatatccacccga
aaaaaagccgaccgtaagacgcttcttaatcccaaggataaaagccaggtaaaaaaagtg
aatgggcatgagcttaaattcaccaacctcgacaagattttctggcccgacgaaaagctc
acaaagcgcgacctcatcaactattattatcaggttgcgccttatattttaccttacctc
aaaggccgtccacagagtatgaaccggtatccggacggtattgaaggtgaaagtttctat
tttaaagatgttacaggcaaggcgccggactgggcagaaacgcttggctatgtgagtgaa
tcagacggtcgcgaaagacgctatctggtcggcaaagatgaagcaacgttactctttatg
gccaacctaggctgcattgaaatgaatccgtggaacagcaccattaaaaaacccgatcat
ccgacattctgcattatcgatctcgatcctgacgagaatactttcgatcaggtcatcgaa
actgctcaggttacaaaacagttactcgacagcatgggagcgccttcctactgcaagacg
agcggctccaccgggctgcatatttatattccgctcgggaacaaatatacctacgagcag
tcgaaagaatttgcaagggcgttggtaacacttgtccatcaggaactgcctgaaattaca
agtatcgagcgcatcataaagaagcgtaaaggcaagatgtatcttgatttcctccagaac
cgtccgcacgccaccattgccgctgcctattcggtaaggcctaaaccgggcgctacggta
tcgatgccgctgcattgggatgaggtgaaaaaaggtcttaaaatgaaagattttacgatg
cagaatgcactcgaacgcatcaaaagtgaaggcgatatcttcaaaccggttctcggcaaa
ggcattgatctcgaaaaagtgctgcgtaaatttgaagagagcagaaaatga
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