Faecalibacter bovis: J9309_05610
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Entry
J9309_05610 CDS
T07705
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fbo
Faecalibacter bovis
Pathway
fbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J9309_05610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fbo03400
]
J9309_05610 (mfd)
Enzymes [BR:
fbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J9309_05610 (mfd)
DNA repair and recombination proteins [BR:
fbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J9309_05610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
ResIII
CarD_TRCF_RID
SBP_bac_3
RecG_dom3_C
DUF4449
Motif
Other DBs
NCBI-ProteinID:
QTV06792
LinkDB
All DBs
Position
1170387..1173752
Genome browser
AA seq
1121 aa
AA seq
DB search
MEQKTIHNVLSLYDSSEFVQKLIANFKNNPQQKLNIKGFLGSGLSLLTAQLYQRLPRPIF
LLLDDKEEAAYYLNDLESLFSKEEVLFFPSSYRRPYEIEEIQNANVVIRTEVLNALANKK
PKIIVTYSDALLEKVVTKTALSANTLKVKVGSELGIEFISEMLFEYNFNKVDFVSEPGEF
SIRGGIIDVFSYSGEHPYRISLFGDEVETIRTFDIDSQLSIATTKEITIIPNLENKAIDE
KRESFLEYIPKDSLFITKNIDVVSNQIKKNFEKAEEIYVNLKSEIKRAEPKDLFLDQNGF
LHQLVNFGVIELSNKSYFETVETLDSPFKPQPSFNKQFELLIDDLNERKENGFRNALLCS
NETQIKRFEEIFDDIGKDVSYIPVLGSLYQGFVDEELKITCFTDHQIFERYYKYNVRSSF
SKKESITLKEINTLQVGDFVTHIDYGVGKFAGLVTVDNNGTRQESIKLIYQNNDILYVNI
HSLHKIAKFRGKDGAEPKISKLGSPAWKNLKNKTKAKVKEIAFDLIKLYAKRRTRKGFAF
SPDTYLQTELEASFIYEDTPDQFKATQDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAL
KAAVDGKQVAVLVPTTILAFQHYKTFSERLKDLPVKVAYLNRFVTGKKKKDTLEGLKSGQ
VDIVIGTHQLVNSKLEYKDLGLLIVDEEHKFGVAVKDKLKTLRENIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVETQLVGFNEEVFRDAIMYEMQRGGQVYIIHNRVQSLK
DIAGMVQRLVPDARVATGHGQMDGKELEAVLLDFIDGRYDVFVSTTIIESGLDVPNANTI
LINDAQNFGLADLHQMRGRVGRSNRKAFCYLIAPPISVLTDEARKRLQAIEQFSDLGSGF
NIAMKDLEIRGAGNLLGGEQTGFMMDIGFETYQKILNEAIEELKETDFKDLFEEERNGQV
VEYVKEVQIDTDLPVQLPDEYIESSEERLILYKELADVEDRQVLEKFRSNLIDRFGELPK
EAENLLLSVELKWVSKKLGFEKVVLKKGSMLCYFISKPQSEFYQSDEFRLVLNNVQSNSK
NISFKEKPPKNGEEYPTLLLRFENVKNVKQALEYLNNLINS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttggaacaaaaaacaattcataatgtcctaagcttatacgattcatcagaattcgtacag
aagcttattgctaattttaagaataatccacaacaaaagttaaatataaaaggcttttta
ggctctggattaagtctattaactgcacaactttatcagcgtttaccacgtcctattttt
ttacttttagatgataaagaggaagctgcgtattatttgaatgatttagaatctctattt
tctaaagaggaagttttattttttccgagttcgtatcgcagaccttatgaaatagaagaa
attcagaatgcaaacgtagtaattcgtacagaagtattaaatgctttagccaataagaaa
ccgaaaattatagttacttatagcgatgcattactggagaaagtagtgacaaaaacagct
ttatcggcgaatacgttaaaagttaaagttggatctgaacttggaattgaattcatttct
gaaatgttattcgagtacaatttcaataaggttgatttcgtatcagaaccaggagagttt
tctattcgtggaggaattatagatgttttctcttattcgggtgaacatccttaccgtatt
tctctttttggggatgaagtggaaaccattcgtacattcgatatcgattctcaactttca
attgctactacaaaagaaatcacaattattccaaacttagagaataaagcaatcgatgaa
aaacgagaaagctttttggaatacattccgaaagattcattgtttatcacaaaaaatatc
gatgttgtttctaatcagattaaaaagaacttcgagaaagcagaagaaatttatgttaat
ttaaaatctgaaattaaacgtgctgaacctaaagatttattcttggatcagaatggtttt
ttacatcaattggtgaatttcggtgtgattgaattatcaaataaatcgtatttcgaaacc
gtagaaacattagattctccttttaagccacaaccgtcttttaacaaacaattcgaatta
ttaattgatgatttaaatgagcgaaaggaaaatggatttcgtaatgctttattatgttca
aatgaaacacagatcaagcgttttgaagaaatctttgacgatataggaaaggatgtttct
tatattccggttttaggctcgttatatcaaggttttgtcgatgaagagttgaagattact
tgttttacagatcatcagattttcgaacgttattataaatacaatgttcgttcgtctttc
tctaaaaaagaatccatcacattaaaagaaatcaacacgttacaagtcggagattttgta
acacatattgattatggagttgggaaatttgctggtttagtaactgttgataataatgga
acaaggcaagaatcgatcaaattaatttatcaaaacaacgatattttatacgtcaatatt
cattctttacacaaaattgcaaagtttcgtggtaaagacggtgccgaaccaaaaatttct
aaattaggttctcctgcatggaaaaacctgaagaataaaacgaaagcaaaagtaaaagaa
attgctttcgatttgattaaattatacgcaaaacgccgtactcgtaaagggtttgctttt
tcaccagatacctatttacagaccgagttagaagcttcgtttatttatgaagatacacca
gatcagttcaaagcgacacaagatgttaaagctgatatggaatctgatcgtccaatggac
cgattggtttgtggtgatgtagggtttggaaaaactgaggttgcgatccgtgccgcatta
aaagcagcagtcgatggaaaacaagttgcagttttggttcctacaacaattcttgcgttc
caacattataaaacattttcagagcgtttgaaagatttgcctgtaaaagtggcttaccta
aatcgttttgttacaggaaaaaagaaaaaagatacattagagggattaaaatcgggacaa
gttgatattgtcattggtactcatcaattagttaattcaaaattagaatataaagattta
ggattattgattgttgatgaagagcataaatttggtgtcgcagttaaagataaattaaaa
actttacgagaaaatattgatacgttaacacttacggctacgccaattcctcgtacactt
caattctcattgatggcggctcgtgatttatctgtaattaaaacgcctccacctaatcgt
caacctgtcgaaacacaattggtcggttttaatgaagaagttttccgtgatgcaatcatg
tacgaaatgcagcgtggaggacaagtatatatcattcataatcgtgtacaatcgttaaaa
gatattgccggaatggtacaacgattagttccggatgctcgcgtagcaacaggtcacggg
caaatggacggaaaagaattagaagcggttcttttagattttattgatggtcgttatgac
gttttcgtttccactacgattatcgaatcaggtttagatgtaccaaacgcaaatacaata
ttaattaatgatgctcaaaatttcggtttagcagatttacatcaaatgcgtggtcgtgta
ggtcgtagtaaccgtaaagcattttgttatcttattgcgcctccaatctctgttttaacg
gatgaagctcgtaaaagacttcaagcaattgaacaattttcggacttaggttcaggattt
aatatcgcaatgaaagatttggaaattcgtggagctggtaatcttttaggaggtgaacaa
accggatttatgatggatattgggtttgaaacttatcagaaaattctaaatgaagcgatc
gaagaattaaaagaaactgattttaaagatttatttgaagaagagcgtaatggtcaagta
gtcgaatatgtaaaagaagttcagatagatacagatttgccagttcaattacctgatgaa
tatatagaaagttcagaagaacgtttaattctttacaaagaattagcagatgttgaggat
aggcaagttttagaaaagtttagatctaatttaattgatcgttttggtgagttgccaaaa
gaagcagagaatttacttttatcagtagaattaaaatgggtttcgaaaaaattaggtttt
gaaaaggttgtattgaaaaagggttctatgttatgttattttataagtaaacctcaatca
gaattttatcaatcagatgaatttagactggttttaaataacgtgcaatcaaactctaaa
aatattagttttaaagaaaaaccgcctaaaaatggtgaggagtatccgactttgttattg
aggtttgagaatgtgaaaaatgtgaaacaagcattagaatacttaaataatttaataaat
agttaa
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