Folsomia candida: 110860718
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Entry
110860718 CDS
T05043
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fcd
Folsomia candida
Pathway
fcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110860718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcd03021
]
110860718
03019 Messenger RNA biogenesis [BR:
fcd03019
]
110860718
Transcription machinery [BR:
fcd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110860718
Messenger RNA biogenesis [BR:
fcd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110860718
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
110860718
NCBI-ProteinID:
XP_021965504
LinkDB
All DBs
Position
Unknown
AA seq
1517 aa
AA seq
DB search
MALEKKMTNLSAIEEDAVTQFEGLLIELKINSKPMINVLTMMAEDFLRQAPIVVRTIEGH
LNSVQPSLKLPVLYLIDSIVKNVGQEYPSLFTQNIVSTFCGVFEKVYKVDDKVKLQMFKL
RQTWNDHFPQRKLYAIDVRCHQFDKNWPISAPPPSNTSSIHVNPKFLNTTTPAIKTLPPK
VSPVVAGVVETASLLDIGPVPEDVDEVHLRETLLQKRKELLELQQKKIELELMQTKSALE
SKRLEEIQSTVKQEKLLLGQAEKAKSKTYIAHQLLSNAAANIVKTGAHPSTPPQPVQVQV
ALQSLVPAPPVKMEKNKWEADKDSSKDRTKDKERENHRGERDRSGSRGKRTSSTSSSKDS
KDHKVRRNYNKDDHENKRSMSKSTSKSPTRPIAIIKEEVSDHNSSSSSPRHHRSPKSHHK
KSNSGSSGLEDLLPISRKGEESEEKSPRRKHNRSSSKESKASKTTRGGNDHNRDGGEDKR
SSTSKQHAKKSAVIKAQEHENNFRARRSAVLKRNYRKTQGIDMDDDENKIPPQQQQQMQI
SSAEDPSSNNTNTIDVDLRFHGRRGGDTDMQQQDDSPNNCQNNESLPKKPRLAGNGNVIV
ESLFGREDVDLRQTPCGNWMGPAGGPHPTPWGPDHPRMMMRGGADQQQWGPPPPLLRPGP
RGPNPFEEALDFPRQPPIEREMRPADRDGPWLPNHPRMNQHIGDQWGLAPPPRGPIGPNP
FEAALDQGHFIPNPTEMELRIMNERSGHFNKALRRGGRGQRGSRGRGGGGRGGFMEQHNM
MGDQQQHQLMEMRNFPFAINNNLGNNPTPIFPPHGHDQQQRMARDPFNPFIHESPNNNDN
GEQQRAPLNENDPPALGILDVSSLLEQAVSLGLLPATSSEPAAKEAGAEIKAEVVEEAKV
VLNDPPKESAISKYQKYQKFQRNNHKKMMMAPVQATPPPPLPTVDVLLVSEEKNYFKERR
QGLINQLWVGKQCATCGLRFPPDQNAKYEQHLDWHFRRNARSRKEKEDTGAKKPQRRAWY
YKLPEWILFEEIEDIEERAASMFETQGDADATTQSPGGIVSPEECSVPASSHTGSVCPQC
GENFESYYDQDKEEWRLRNAVVDSTEGEDKVYHYICHQDYINSSMMTEEAMQVDEISSVT
VDDVQNGTEEVTEQASQQDSSPPPQEASPLPPQLEDDDDEVLILKEGKKEVLVEVMDIDD
VDDEGEGEKEDENNDNEKNKEIEIGPEEINTTATATESTSDDVLSNADRLPVLNYSIISR
PISSPIVVNDDSSSNLLPGISEDSSGGVFGFALNLGNIRERSESPEQVDEKRIVYKSMEF
DFPKIKIEPPDDYDDVPDDVVSTPNLMAMPTPIVELSSDQDPIDLTGEDDSVDECDGPPP
RSLHQMTSIDGNLHQEVYVPIIVPPTKMRINISGLDISAKSPSSKDPKPEDPAAAGAASP
TPEKGSTSPKSPTTTVVPRSPEPSDSNNKCSNAEVMSPEEMKYLKPRLHEFFESGRKFKN
CPPKQGKKEESGLCVIS
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atggcgctagaaaagaaaatgaccaatttatcagccattgaggaggacgctgtgacgcag
tttgaagggctgttgatcgaattgaagattaattcaaaacccatgataaacgtgttgaca
atgatggcggaggattttctgagacaggcccccatcgtagtgaggacgattgaaggacat
ttgaactcggttcaacccagtttgaaactacccgtgctctacttgatcgattccattgtt
aaaaatgttggacaggaatatccaagcttgttcactcagaatattgtgtcaaccttttgt
ggagtgtttgaaaaggtatacaaagttgatgataaagtgaagctacaaatgttcaagtta
cgtcagacgtggaacgaccatttccctcaaagaaaattatacgcgattgatgtaaggtgt
catcagttcgataagaactggcccatttcagccccacccccaagcaacacgagcagtatt
cacgttaatcctaaatttctcaacaccacaactccggctattaaaacattaccaccaaaa
gtgtcacctgtcgttgctggggtcgttgaaaccgccagtctcctcgacattggtcccgtt
ccagaagatgtggatgaagttcatttgcgcgaaacattgttacagaaacgaaaagagctg
ttggaactgcaacaaaagaaaattgagcttgaattaatgcaaactaagtcagccttggag
tcgaaaagactggaggagatccagtctacagttaaacaggagaaattgttactgggtcaa
gcagaaaaggcgaaaagtaaaacctacattgctcatcaactcctctccaatgctgctgcc
aacattgtgaagacaggtgctcatccttcaaccccaccacagcctgttcaagtacaagta
gctcttcaatctctagtacctgctccacccgtcaaaatggagaaaaataaatgggaagct
gataaagactcgtccaaagatagaacaaaggacaaggaacgcgaaaatcacagaggggaa
cgagatagaagtggatcacgggggaaaagaacgtcctccacttcgtccagcaaagactcg
aaagaccataaagtacgaagaaactacaacaaggacgaccatgagaataagcgatccatg
tcaaagtcaactagtaaaagtcctacccgtcctatcgccatcattaaagaggaagtaagc
gatcataactctagcagcagcagccctcgtcatcaccgttcccctaaatcacatcacaaa
aagtccaacagtggtagcagtggactggaggatcttttgccaatatcgcgtaaaggtgaa
gaaagtgaagaaaaatctccccgaaggaagcacaatagatcttcaagtaaagaatcaaaa
gcttccaaaactaccagaggaggaaatgatcacaacagagacggcggggaggataagcga
tcctccacgtctaaacagcatgccaagaaaagtgctgtgataaaggcgcaagaacatgaa
aataattttcgtgctcgtcgttccgccgttctaaaaaggaactatagaaagacgcaagga
attgatatggacgacgatgagaataaaatccccccacaacagcaacaacaaatgcaaatc
tcatctgctgaagatccctccagcaacaatactaataccatcgatgtggatttgcgattc
cacggacgtcgtggcggtgacacggacatgcagcagcaggatgattcgcccaataactgt
caaaataatgaatctcttccgaagaaacctcgcctcgcaggaaacggaaacgtgatagtc
gaaagtttatttggtcgcgaggacgttgatctaaggcagaccccttgtggaaactggatg
ggtcctgcaggtggaccacacccgacgccgtggggacccgatcacccaaggatgatgatg
cgcggaggagcagatcaacaacaatggggcccacccccaccccttcttcgtcccggtcca
cgaggtccaaatccatttgaagaagccttagattttccccgtcaaccaccaattgaaaga
gaaatgcgtccagcggatcgagacggtccttggctacccaatcatccacgaatgaaccaa
catattggtgatcaatggggtctagctcctccaccacgaggtccgattggtccaaatcca
tttgaagctgctctagatcaagggcactttattccaaatccaactgagatggaattacgt
attatgaatgagagatcaggacactttaataaagctctacggcgtggtgggcgtggacaa
cgaggcagtcgaggtcgaggtggaggagggcgtggtggttttatggagcaacataacatg
atgggtgatcagcagcagcatcaactaatggagatgcgaaatttcccattcgccatcaac
aacaatcttggcaacaatcccactcccatcttcccccctcatggtcacgaccaacaacag
agaatggcccgagatccttttaatccatttatccacgaatcacccaataataatgataat
ggtgaacaacaacgtgctccattaaatgaaaatgaccctccagccttgggtatcttagat
gtgtcatctcttcttgaacaagccgtcagtctcggcctcttgcccgcaacaagtagtgaa
cctgctgctaaagaagccggcgcagaaataaaggcggaggtagtggaagaagcgaaagtg
gtgctgaacgatcctcccaaagaaagtgcgatttccaagtatcagaaataccaaaagttt
caaaggaataatcacaagaagatgatgatggcaccggtgcaggctacgcccccgccccct
ctcccaacagttgatgtgcttctagtctcggaggagaaaaattattttaaagaaaggcga
caagggttgatcaaccaactctgggtggggaaacagtgtgcgacgtgtggactaagattt
ccaccagatcaaaatgcaaaatatgagcagcatctggattggcactttcgtcgcaatgct
cgtagtcgaaaagaaaaggaagacaccggagcaaagaaacctcaacgacgtgcctggtac
tacaaattgcccgaatggatacttttcgaagagattgaggatatagaagaacgagctgcc
agcatgttcgaaactcaaggggacgctgacgccacgacacaaagtcctggtggtatagtt
tctcctgaggaatgctcagtgccggcgtctagtcatacagggtctgtttgtcctcaatgt
ggcgagaactttgaatcgtactacgaccaggataaagaggaatggagactgagaaacgcc
gttgtagattcaacggaaggagaagataaagtttatcattatatttgtcatcaggattat
attaattcctcaatgatgacagaggaagcaatgcaagttgatgaaatatccagcgtgacc
gtggatgatgtgcagaacgggacagaggaagtcacggaacaagcatcacagcaagactcg
tcacctccaccacaagaagcatcacctcttcctccacagcttgaggacgatgacgacgaa
gtgttgattttgaaagaaggaaaaaaggaagtattagtagaagtaatggatatagatgat
gtagatgatgagggtgaaggagagaaagaggacgaaaataatgacaatgaaaaaaataaa
gaaattgaaatcggtcctgaagaaattaacactactgctactgctaccgaatctactagt
gatgatgtattatctaacgctgatagacttcctgtccttaattattctattattagtaga
cctatttcctccccaattgttgtaaatgatgattcatcgtctaatttgttacctggtatt
tctgaggactcgagtggtggggtttttgggtttgctctgaatttgggaaatataagggaa
cggtccgagtctccagagcaggttgatgaaaaacgaattgtttataagagcatggagttt
gattttccgaaaatcaaaattgagccccccgatgattatgatgacgtacctgacgatgtt
gttagcactcccaacctgatggcaatgccgactcctattgtggaattatcctctgaccag
gacccaattgatcttactggggaggatgattctgttgacgagtgtgatgggcctccccct
cgatcccttcatcaaatgacctcaattgatggaaatcttcatcaggaagtatatgtccct
attattgtccctcccaccaagatgcgaatcaatatatccggattggacatttcagccaaa
tccccctcctccaaagatcccaaacccgaagacccagctgcagcaggtgcagcgtcccca
actcccgagaaaggatccacctcccccaaatccccaacgacgactgttgtaccgcgtagt
cccgaacctagtgatagtaataataaatgtagtaacgcagaagttatgtcccctgaggaa
atgaaatatctgaaaccgcgccttcatgaatttttcgagtctggccgtaagtttaaaaac
tgtccacccaagcaaggaaagaaggaggagtctggcctttgtgtgatatcatag
DBGET
integrated database retrieval system
