Flagellatimonas centrodinii: JN531_015830
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Entry
JN531_015830 CDS
T07957
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fce
Flagellatimonas centrodinii
Pathway
fce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JN531_015830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fce03400
]
JN531_015830 (mfd)
Enzymes [BR:
fce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JN531_015830 (mfd)
DNA repair and recombination proteins [BR:
fce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JN531_015830 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ULQ46556
LinkDB
All DBs
Position
3294486..3297827
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AA seq
1113 aa
AA seq
DB search
MTIPLYALAAAEHALAHPSLTVLVAANEQQAYRLEEHLRFFLADRHPLIHLADTEVLPYD
PFSPHQEVLSQRLAALAALVDRQPALLLVTADSWLQRLPPAAWLGGRRFDLRVGDRLAVD
PFRARLVAAGYAAVSEVQTQGEFAVRGALIDLFPMGSEQAFRIDLFDEDIESIRTFDPET
QRSQDKVEAIHLLPAREFPSDRDGIDGFRRRYREYFPGDPARSRIYSEVSQGQMPGGIEA
YLPLFHTDTASLADYLPDDAHLMMTAPLAEQLEQDWLQIQDRFERYSGDLTRPLVRPDDL
YFPPSVARRAMAAFQWVEPPTGLAPLVEPAETLMTRLADSPLRTLFVAESAGRREALLER
LRRQGLVPRAVADWPAFTQDPSRFAITLGPVDEAVTHPEAGWRVIGEAALTGRPLPVVRR
ARATKVRDPDTLLRDLSSLHLGSPVVHVQHGVGRYAGLTTLEAGGALAEYLVLEYAGGDK
VYVPVASLNLIHRYTGSEEDKAPLHSLGSERWKKARAKAREKAHDVAAELLQIQARRLAK
PGEPIVWDDDDYQRFCAGFPFEPTPDQQTAIEAVLADLASDKPMDRVVCGDVGFGKTEVA
LRAVFAAARAGRQVCLLAPTTLLVEQHAKNFADRFADWPLRVAALSRMRTGKEQTALLKQ
LEEGSLDVIIGTHRLLQPDIRFHKLGLVVVDEEHRFGVRHKETLKNLRANVDLLTLTATP
IPRTLNMSLAGLRDLSIIATPPASRIAIKTTVAEWDNALVVEACQRELRRGGQIYVLHNE
VTSIERFSANLRELVPEARIRVAHGQMRERELEQVMLDFYHQRFNVLVCTTIIESGIDVP
SANTILIDRADKLGLAQLHQLRGRVGRSHHRAYAYLLVPSLRGLSADAQKRLDAIESLGD
LGSGFALATHDLEIRGAGELLGDDQSGQIEEVGFTLYAELLARAVKAIQRGALDDSPFGS
SECEVDLGIAALIPDDYVPDIATRLTLYKRISEAESADILAELRVEMIDRFGLLPPPAER
LFDQANLRIALATRGFRRLRIGERSATLDFGSAPRFDPLQLIKLIQTDPRRYKLEGQKCL
HVYLDFAEPATRAERLMPLFDALPPAPRPEAPA
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatcccgctgtacgcccttgccgccgccgagcacgcgctcgcgcatcccagcctg
accgtcctggtcgccgccaacgagcagcaggcctaccggctcgaagagcatctgcgattc
ttcctggcggatcgccatccgctgattcacctcgccgataccgaggtgctgccctacgac
cccttctcgccgcatcaggaggtcctgtcgcagcggctggccgcattggcggcgctggtg
gaccggcagccggccctgctgctggtcaccgccgacagctggctgcagcgactgccgcca
gcggcctggctgggggggcgccggttcgatcttcgcgtgggggatcgtctggcggttgac
ccgttccgggcgcggctggtggcggccggctatgccgccgtttccgaggtccagacccag
ggcgagttcgccgtccgcggcgccttgatcgacctgttcccgatgggctcggaacaggcc
ttccgcatcgacctgttcgacgaagacatcgagtcgatccgcaccttcgacccggaaacc
cagcgcagccaggacaaggtcgaggcgattcacctgctgccggcgcgtgagttcccgagc
gaccgcgacggtatcgacggcttccgtcgccgctaccgcgaatatttccccggggacccg
gcgcgcagccgcatctacagcgaggtgagccagggtcagatgccgggcggcatcgaggcc
tacctgccgctgttccacacggacactgcgagcctcgccgactatctgcccgacgatgcg
cacctgatgatgacggcgccgctggccgaacagctggagcaggactggctgcagatccag
gatcgcttcgaacgctattccggcgacctgacacggccgctggtgcgcccggatgacctg
tacttccccccatcagtggcgcgtcgcgcgatggcggcattccagtgggtcgaacccccg
accgggctggcgccgctggtcgaaccggccgagacgctgatgacgcggctggcggacagt
ccgctgcgaaccctgttcgtggccgaatccgcgggacgtcgcgaagccctgctggagcgc
ctgcgacgccaggggctggtgccccgcgcggtggccgactggcctgcgttcacgcaagac
cccagccgcttcgccatcaccctcgggccggtggacgaggcggtgacccaccccgaggcg
ggctggcgcgtgatcggcgaggcagcgctcaccggacggccgctgccggtggtgcgccgg
gcgcgcgccaccaaggtgcgggatcccgacaccctgctacgggatctgtccagcctgcac
ctgggctcaccggtggtgcatgtccagcatggcgtcggccgctacgccggcctcaccacg
ctggaggccggcggcgcgctggcggaatatctggtgctggaatacgccggcggcgacaag
gtgtatgtgccggtcgcctcgctcaacctgatccaccgctacaccggcagtgaagaggac
aaggcgccgctgcacagcctcggctccgagcgttggaagaaggcacgcgccaaggcacgc
gagaaagcccatgacgtcgccgccgagctgctgcagatccaggcccgtcgtctggccaag
ccgggcgagccaatcgtctgggacgatgacgactaccagcgcttttgcgccggctttcca
ttcgagccgacgccggaccagcagaccgcgatcgaagcggtgttggcggatctggcctcc
gacaagccgatggaccgggtggtttgtggcgacgtcggcttcggcaagaccgaagtcgcg
ctgcgcgccgtcttcgccgccgcccgcgccggacgccaggtctgcctgctggcaccgacc
acgctgctggtcgagcaacatgccaagaactttgccgatcgctttgccgactggccgcta
cgggtggccgcgctatcacgcatgcgtaccggcaaggagcagaccgccctgctgaagcag
ctggaggagggttctctcgacgtgatcatcgggacccaccgtctgctgcagcccgatatc
cgctttcacaagctcggcctggtggtggtcgatgaggagcaccgcttcggcgtccgccac
aaggagacgctcaagaatctgcgggccaacgtcgacctgctgacgctgaccgcgacaccg
attccgcgcaccctcaacatgagcctggccggcttgcgcgatctgtcgatcatcgccacc
ccgccggcctcgcgcatcgccatcaagaccaccgtcgcagagtgggacaacgcgctggtg
gtggaggcctgccagcgcgagctgcgtcgcggcggccagatctacgtgctgcacaacgag
gtcaccagcatcgagcgcttcagcgccaatctgcgcgaactggtgcccgaggcccgtatc
cgcgtcgcccacggccagatgcgcgaacgcgagctggagcaggtgatgctggatttctac
caccagcgtttcaatgttctggtgtgcaccaccatcatcgagtcgggcatcgacgtcccc
agcgccaacaccatcctcatcgaccgcgccgacaagctggggctggcacagctgcaccag
ttgcggggccgggtcggccgcagccaccaccgagcctatgcctatctgctggtccccagc
ctgcgcggcctcagcgccgacgcgcagaagcgccttgatgccatcgaaagtctcggcgat
ctcggctccggctttgccctggccactcacgaccttgagatccgtggtgccggtgagctg
ctgggcgacgatcagtccggccagatcgaggaggttggctttaccctttatgccgaattg
ctggcgcgtgcggtcaaggcgatccagcgtggcgcccttgacgacagccccttcggcagc
agcgagtgtgaagtcgacctcggaatcgccgcgctgattcccgacgactatgtacccgat
atcgccacccggttgaccctctacaagcgaatcagcgaagccgaaagtgcggatatcctg
gccgagctgagggtggaaatgatcgaccgcttcggcttgttgccgccgccggccgagcgc
ctgttcgatcaagccaacctgcgaattgcgctggccacccgcggcttccgacggctgcga
atcggtgagcgttcggccacgcttgatttcgggtccgcgccccgctttgatccgctgcaa
ctgatcaagctgatacagaccgatccgcggcgctataagcttgagggccagaagtgcctg
cacgtctatctcgatttcgccgagccggcgacccgcgccgaacgcctgatgccgctgttc
gacgcgctgccacccgctccccgtccggaggcccccgcctga
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