Fusobacterium canifelinum: I6I83_00520
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Entry
I6I83_00520 CDS
T07213
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fci
Fusobacterium canifelinum
Pathway
fci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6I83_00520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fci03021
]
I6I83_00520 (rpoC)
03400 DNA repair and recombination proteins [BR:
fci03400
]
I6I83_00520 (rpoC)
Enzymes [BR:
fci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6I83_00520 (rpoC)
Transcription machinery [BR:
fci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6I83_00520 (rpoC)
DNA repair and recombination proteins [BR:
fci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6I83_00520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QQS87670
LinkDB
All DBs
Position
complement(112954..116913)
Genome browser
AA seq
1319 aa
AA seq
DB search
MGIRSFEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPEKDGLFCEVIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESVLYFARYIVTSSQEQTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTA
IDLEKLRDELENELVDANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSSGEPIAVPSQDMVMGCFYMTKERPGEKGEGKLFSNIEQVITAYQNEKVGTHALIKVR
MNGELVETTPGRVLFNEILPEIDRNYHKTYGKGEIKALIKSLYEVHGFTETAELINRIKN
FGYHYGTFAGVSVGIEDLEVPPKKKDLLNKADKEVAQIDKDYKSGKIINEERYRKTIEVW
SRTTEAVTKAMMDNLDEFNPVYMMATSGARGNVSQMRQLAGMRGNMADTQGRTIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVGANGKIIEKLSERINGRVLAEDLVHKGKKIAKRNTMIHKELLDKIEELGIKKVKI
RSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATVVNSKKAENDGEVSFRDIKTIEIDGEDVVVSQGGKIIIADNEHEVDSGSVIRVKEGQ
KVKEGAVLVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSVDSEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELF
EARNPKGKATLAEIDGRIEILPTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDVLSIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRK
VRIVDSGASLFLEDEVIEKRVVDLENKKLEEEGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKAIKIKYNSEDKPEEE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaagttttgaaaaaattagaataaaattagcatctcctgaaaaaatatta
gaatggtctcatggggaagtaacaaaacctgaaactataaattatagaacactaaatcca
gaaaaagatgggttattttgtgaagtaatatttggaccaacaaaagattgggaatgttct
tgtggaaaatataaaagaatgagatataaaggcttagtttgtgaaaaatgtggagttgaa
gtaacaagagctaaggttagaagagaaagaatgggacatataactctagcttctcctgtt
tctcatatttggtattcaaaaggaagtccaaataaaatgtctttaattattggtatctca
tcaaaagaattggaatcagttctatattttgcaagatatatagtaacttctagccaagaa
caaactgttgaagttggaaaaatattaacagaaaaagaatacaaattattaaaacaatta
tatggaaataagtttgaagcatatatgggagcagatggaattttaaaactccttacagct
attgacttagaaaaattaagagatgaattagaaaatgaattggtagatgctaattcagct
caaaaaagaaagaaacttgtaaaaagattaaaaatagttagagattttatagcttctgga
aatagacctgaatggatgatacttacaaatgttcctgtaattccagcagaacttagacca
atggttcaacttgatggtggaagatttgcaacttcagatttaaatgatttgtacagaaga
gttataaatagaaataacagacttaaaaaactattagaaataagagctccagaaattgtt
gtaaaaaatgaaaaaagaatgttacaagaagcagtagatgctcttattgacaatggtaga
agaggtaaaccagtagttgctcaaaataatagagaattaaaatctttatctgatatgtta
aaaggaaaacaaggaagatttagacaaaacctactaggaaaaagagttgactattcagca
agatcggttatagttgttggtccttctttaaagatgaaccaatgtggtatacctaagaaa
atggctcttgaattgtataaaccatttataatgagagagttagtaagaagagaattagct
aacaatattaaaatggctaaaaaattagttgaagaatcagatgataaagtttgggcagta
atagaagatgttattgcagatcaccctgtacttttaaacagagcccctacattacataga
ttatcaatacaagcattccaacctgtattgatagaaggtaaagctataagattacatcct
cttgtttgttctgccttcaatgctgactttgatggggaccaaatggcagtacacttaact
ttatctcctgaatcaatgatggaagctaaacttttaatgtttgctcctaataatatcatt
tctccatctagtggagaacctattgcagttccatctcaagatatggtaatgggatgtttc
tatatgacaaaagaaagaccaggagaaaaaggagaaggaaaactattctctaatatagaa
caagttattactgcttatcaaaatgaaaaagtgggaactcatgctctaataaaagttaga
atgaatggagagttagttgaaacaactcctggaagagtgttatttaatgaaattttacca
gaaatagacagaaattatcataaaacttatggtaaaggggaaataaaagctttaattaaa
tcactatatgaagtgcatggatttactgaaacagctgaacttattaacagaataaagaac
tttggataccactatggtacttttgcaggggtttcagtaggaatagaagacttagaagtt
ccacctaaaaagaaagatttattgaataaagcagataaagaagttgctcaaatagataaa
gattataaatctggaaaaattataaatgaagaaagatatagaaagacaatagaagtttgg
tcaagaacaactgaagcagttactaaggcaatgatggataacttggatgaatttaaccca
gtttatatgatggcaacatcaggagccagaggtaatgttagccaaatgagacagttagct
ggaatgagaggaaatatggcagatacacaaggtagaaccatagaagttcctataaaagct
aactttagagaaggactaacagtattggaattctttatgtcttcacatggagcaagaaaa
ggtcttgccgatacagcattaagaactgccgattcaggatatttaacaagaagacttgtt
gatatttctcatgaagttattgttaatgaagaagattgtcatactcatgaaggaatagaa
gttgaagcacttgttggagcaaatggaaagataattgaaaaattaagtgaaagaattaat
ggtagggttttagcagaagatcttgttcataaaggaaagaaaattgctaaaagaaatact
atgattcataaagagttattagataaaattgaagaattagggattaaaaaagtaaaaata
agatctcctttaacttgtgcattagaaaaaggggtttgtcaaaaatgttatggtatggac
ttatcaaactataatgaaatcttactaggagaagctgttggagtagttgctgctcaatca
ataggagaacctggtactcagcttacaatgagaacattccatacaggaggggttgcagga
gcagctactgttgtaaattctaaaaaagctgaaaatgatggtgaagtatcatttagagat
attaaaactattgaaattgatggtgaagatgtagttgttagccaaggtggaaaaatcatt
atagcagataatgaacatgaagttgactcaggttcagtaataagagtaaaagaaggacaa
aaggtaaaagaaggagctgtacttgttacatttgacccttaccatattcctataatctca
tctcatgatggaaaagtacaatatagacactttactcctaaaaatataagagatgaaaaa
tatgatgttcatgaatatctagttgtaagatctgttgatagtgttgactcagaaccaaga
gtacatatacttgataagaaaaatgaaaaattagctacttacaatattccttatggggca
tatatgatggtaagagatggagctaaagttaaaaaaggtgacatcatagctaagattatc
aagttaggagaaggaactaaggacatcactggaggtcttccaagagtacaagaattattt
gaagcaagaaatccaaaaggaaaggcaacacttgcagaaatagatggaagaatagaaata
ttaccaactaagaaaaaacaaatgcgtgttgttaatgttagatcattagaaaatccagaa
gaatttaaagaatatttaattcctatgggagaacgtctagttgttactgatggattaaag
ataaaagctggagataagataacagaaggagctatttctccttatgacgtattaagtatc
aagggtcttgtagctgccgaacaatttatacttgaatctgtacaacaagtgtatagagat
caaggagttacagttaatgataaacatatagaaattattgttaaacaaatgtttagaaaa
gttagaatagttgactctggagcatctttattccttgaagatgaagttatagaaaagaga
gttgtagaccttgaaaataagaaattggaagaagaaggaaaggcacttattaaatatgaa
ccagttatacaaggtatcacaaaagcagctgtaaatacaggaagctttatatctgctgct
tcattccaagaaacaacaaaagttttatcaaatgctgccattgaaggaaaagttgactat
ctagaaggattgaaagaaaatgtaattttaggtaagaaaattccagcaggaacaggattt
aataaatataaagctataaaaattaaatataacagtgaagataaaccagaagaggaataa
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integrated database retrieval system
