Frederiksenia canicola: A4G17_00690
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Entry
A4G17_00690 CDS
T06481
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fcl
Frederiksenia canicola
Brite
KEGG Orthology (KO) [BR:
fcl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A4G17_00690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcl03021
]
A4G17_00690
Transcription machinery [BR:
fcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A4G17_00690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
Merozoite_SPAM
Motif
Other DBs
NCBI-ProteinID:
QIM64067
UniProt:
A0AAE7C1F4
LinkDB
All DBs
Position
complement(148245..150116)
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AA seq
623 aa
AA seq
DB search
MEQHSQLEEQQSQLELLIAQGREQGYLTLSEVHDHLPEELVDADQIEDIIQMINDMGIKV
LEVAPDADDLMLAGGLPDEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTREG
EIDIAKRIEDGINAVQCAVAEYPEALSEFIARYADVEEGTLRLSDLVTAFVDPNAEEAAA
VEEELDVDLHEDEETESTTAPVDEESDEDEESSADTSDDNSIDPELAREKFYALRDQHAK
AILIIQKHGRAHKKSKEQIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRAAERQIQRY
AVEYAQMKKADFIKAFQGHETSDEWIDKAINAKRGAVPKLADYAEQIRVHIVSLQKLEET
SGLTITQIREIGGRISEGELKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQC
LQEMGREATPEELAEKMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSTLEL
PLDSATAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSETLRSFLDD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacattcacaattagaagagcaacaatctcagttagaactgttgattgcccaa
gggcgtgagcaggggtacttaacactttctgaagtgcatgaccacttaccagaagagctt
gtcgatgcggatcaaattgaagacattattcagatgatcaatgatatggggattaaagtc
cttgaagttgcccctgatgccgatgatctgatgcttgcgggtggtttgcctgatgaagac
gtcgttgaagaagcaactaaagtgctttcaacagtagaatctgaacttggccgcaccacc
gatcctgtacggatgtatatgcgggaaatggggaccgttgagctgctaactcgtgaaggt
gaaattgatattgcaaaacgtattgaagacggcatcaatgcggtgcagtgtgccgtagca
gagtatcctgaagcactgagtgaatttattgctcgttatgcggatgttgaagaaggaaca
ttacgtttatctgatcttgtcaccgcatttgttgatccaaatgcagaagaagcggcagca
gtagaagaagagcttgatgtcgatttgcacgaagacgaagaaacagaatctaccacagcg
cctgttgatgaagaaagcgatgaagatgaagagagcagtgcagatacttcagatgataat
tccattgatccagaattggctcgtgaaaaattttatgcactgcgtgatcagcatgccaaa
gcgattctgatcattcaaaaacatggacgtgcacacaaaaagtccaaagagcagattcaa
gcgttatccgatattttccgtgagttccgcttagtgccaaaacaatttgatttgcttgtg
gagtctatgcagaaaatgatgaagcaagtgcgtgctgcagagcgacaaattcaacgctat
gcagtggaatatgcacaaatgaaaaaagcggatttcattaaggcattccaaggacatgaa
acatcagatgaatggatcgataaagcgatcaatgcaaaacgtggagctgtgccaaaactt
gcggattacgcggagcaaattcgagttcatattgtgagtttgcaaaaactcgaagaaact
tctggcttgacgattacccaaattcgggaaatcggtgggcgaatttcagaaggtgaatta
aaagctcgcaaagcgaagaaagagatggtcgaagctaacttacgtttggtgatttcgatt
gcgaaaaaatacaccaaccgcggtttgcaattccttgatttaattcaggaaggtaacatc
ggcttaatgaaagcggtggataaatttgaatatcgccgtggttataaattctcgacttat
gcgacttggtggattcgtcaggcgatcacccgttcgattgcagaccaagcgagaacgatc
cgtatcccagtgcatatgatcgaaacgatcaacaaactcaaccgtatttctcgccaatgc
ttgcaagaaatgggacgtgaagcgactcctgaagagctggcggaaaaaatgggtatgcca
gaagataaaatccgcaaagtgttgaaaatcgccaaagagccgatttcaatggaaacgcca
gtgggcgatgatgacgattcacatttaggtgattttatcgaagacagcacccttgagttg
ccactcgattctgccacggcagaaagccttcgcattgcgaccaacgaagtgttggaaggc
ttaactccacgggaagcgaaggtgctacggatgcgtttcggtattgatatgaacaccgat
cacacccttgaagaagtgggtaaacagtttgacgtaacccgtgagcggattcgtcaaatt
gaagccaaagcgttacgcaagcttcgccacccaagccgttctgaaacgctacgcagtttc
ttagatgactaa
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