Flavobacterium commune: BIW12_05870
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Entry
BIW12_05870 CDS
T05006
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcm
Flavobacterium commune
Pathway
fcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BIW12_05870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcm03400
]
BIW12_05870
Enzymes [BR:
fcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIW12_05870
DNA repair and recombination proteins [BR:
fcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BIW12_05870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
AOZ99001
UniProt:
A0A1D9P8T9
LinkDB
All DBs
Position
complement(1405025..1408399)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSKSALYTLYETSPKTQQIVASLQEKNTAKLHLSGLLGSAVSFVIRSAFKKAELPFLVIL
NNKEEAAYYLNDLEQMIGEQDVLFYPASFRRPYQIEETDNANVLLRAEVLNRINSRKKPA
VIVSYPEALFEKVVTRRDLDKNTLKVHVGDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDNPYRIEFFGDEVESIRTFDVATQLSIEQKKKITIIPNVENKVFQENR
ESFLDYISEQTVIFIQNTEDLLSQLDKQFARAEEAFEKLSKDIKHATPEQLFLNQQAFVK
RALDFSIVELASKAIFRTTKKFEFHIQPQPSFNKQFDLLLNNLSENHFNGYKNYLFCSNE
AQAKRFHDIFETLDEANSENIRKQYNTIVLPLYQGFIDEENQVSCYTDHQIFERYHKFSI
KNGYSKKQNITLKELTTLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQETIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEK
GFQYAPDSYLQNELESSFIYEDTPDQTKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHFRTFSERLKDMPVTIGYLNRFRTAKQKTETLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEVIRDAISYEIQRNGQVYFINNRI
ENIKEVAGMIQRLVPNAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEEARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPAEN
DIETKEYVKDLQIDTDFELLFSDEYINNISERLNLYNELSAIKNEEELVVFQNKLIDRFG
PLPPRANALMNSIRIKWVATRVGIEKLVMKQGKMIGYFVSDQQSDFYQSNRFHKVLQFVQ
KHPSLCKMKEKQTANGLRLLLTFDNVKSTRRALELMEMLGGKEA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatctgccttatataccctctacgaaacttcgcctaaaacgcaacaaattgtt
gcttcgttgcaggaaaaaaatacagcaaaactacatcttagcggtttgctgggttcggca
gtttcttttgtgattcgttcggcgtttaaaaaagccgaattgccttttttagttatttta
aataacaaagaagaagcggcttactatttgaatgatttggaacaaatgataggtgagcag
gatgtgttgttttatccggcttcgtttcgtcgtccgtaccaaattgaagaaaccgataat
gccaatgtcttgcttcgtgccgaagtattaaaccgcattaattcccgtaaaaaaccggct
gtaattgtcagttatcccgaagcgcttttcgaaaaagtggtaacgcgtcgcgatttggat
aaaaacactttgaaagtacatgttggggataaaatttcgattgattttatcaatgaagtt
ttattcgaatacgaattcaaaagagtcgattttattaccgaaccgggcgaattttcggtt
cgtggaggaattgtagatgtattttctttttcgaatgataatccgtaccgaattgagttt
tttggtgatgaggtcgaaagtatccgaacttttgatgtggctacacagctgtcgattgaa
cagaaaaagaaaatcaccattattcccaatgtggagaacaaggtttttcaggaaaaccgt
gagagtttcctggattatatttcggagcaaacggtgatttttattcagaataccgaggat
ttattatcgcaattagacaaacaatttgcccgtgctgaagaagctttcgagaaattgtct
aaggatattaaacacgccactccggagcaattattcctgaatcagcaggcgtttgtaaaa
cgcgctttggatttttctattgtagaattggcttcaaaagccattttcagaactactaaa
aaatttgaattccatattcagccacaaccctcgttcaacaaacagtttgatttattattg
aataatctgagtgagaatcattttaacggttataaaaattatttgttctgttcgaatgaa
gcgcaggcaaagcgttttcatgatatttttgaaactttggatgaagccaattcggagaat
atccgcaagcaatacaataccatagttttgcctttatatcaggggtttattgacgaagaa
aaccaagtttcctgctacaccgaccaccagatttttgagcgttatcataaattcagcatc
aaaaatggttattcgaaaaaacaaaatatcacgctgaaagaattgaccacgctttcggtg
ggcgattatgtaacgcacattgaccacggaattgggaaatttggcggattgcaaaaaatc
caggttgaaggaaaaacgcaggaaaccattaagctcgtttatgccgataatgatattgtg
tatgtgagtatccattcgctgcacaaaatttcgaaatacaatggaaaagacgggacgcct
ccaaaaatatataaattaggttcgaatgcctggaaggttttaaaacaaaaaaccaaggcc
agagtcaaacatattgccttcaatttgattcaattgtatgccaaaagacgattggaaaaa
ggctttcagtatgcaccggacagttatttgcaaaacgaattggaaagttcgtttatctac
gaagatacgccggaccagaccaaatcgactcaggaagtaaaggccgatatggaaagcgac
cgcccgatggatcgattggtttgtggggatgtaggttttggaaaaaccgaagttgccatt
cgtgctgctttcaaggctgtggataatagcaaacaggtagcggttttggtaccaacgacc
atcttagcttaccaacattttcgtactttttcggaacgattaaaagacatgccggtaact
ataggttatttgaatcgttttagaactgccaagcaaaagacggaaactttaaaagattta
gctgaaggaaaactcgatatcgtaattgggacacaccaattggtcaacaaaaatgtagtt
tttaaagatttaggattgttgattgtagatgaggagcaaaagtttggtgtgaacgtaaaa
gacaaactaaaaaccattgcggcgaatgtggataccttgactttgacggcaacgccaatt
ccaagaaccttacagttttcgttaatggcagcgcgagatttatcggtaattacaacgccc
ccgcctaaccgttatcctattgaaaccaatgtggttggttttaacgaagaagtgattcgc
gatgcgatttcgtatgaaattcagcgtaacggacaggtatattttatcaataaccgaatt
gaaaatataaaagaagtggctggaatgattcagcgtttggtacctaatgccaaagttgga
atcggtcacggacaaatggacggtaagaaactcgaagaactgatgttggctttcatgaac
ggggaatttgatgttttggtggctacaactattatcgaaagtggattggacgtacctaat
gcgaacacgattttcattaataacgctaataattttggactgtctgatttacaccagatg
cgtgggcgtgtgggacgaagtaataaaaaagcgttttgctattttatctgccctccttat
tcgtcaatgacagaagaagcccgaaaacgtattcaggctttggagcaatttagcgagctg
ggcagtggatttaatattgcgatgaaagatttggagattcgtggtgccggggatttattg
ggtggtgaacaatctggtttcatcaatgaaattggttttgatacctatcaaaaaattatg
aatgaggctatcgaagaattgaaggaaaacgaatttaaagacttgtatccggcagaaaat
gatattgaaaccaaagaatatgtaaaagacctgcaaattgataccgattttgaattgttg
ttttcggatgaatacatcaataatatttcggaacgtttgaatttgtataacgaattgagt
gcgattaaaaacgaagaggaattagtggttttccaaaataaactgattgaccgttttgga
cctttgcctccgcgagccaatgcattaatgaatagtatccgtatcaaatgggtggcaacg
agagttggaattgaaaaattggtgatgaaacaaggaaaaatgattggttattttgtgtct
gatcagcagtctgatttttaccagtccaaccgttttcataaggtgttgcagtttgttcaa
aaacatccttcgctttgtaaaatgaaagaaaaacaaaccgctaacggtttgcgcttatta
ttaacttttgacaacgtaaaatcaacccgaagagccttggaattgatggagatgttgggt
ggaaaagaagcttaa
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integrated database retrieval system
