Flavobacterium collinsii: TRV642_1184
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Entry
TRV642_1184 CDS
T08703
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcs
Flavobacterium collinsii
Pathway
fcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TRV642_1184 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcs03400
]
TRV642_1184 (mfd)
Enzymes [BR:
fcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TRV642_1184 (mfd)
DNA repair and recombination proteins [BR:
fcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TRV642_1184 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
CAI2766192
UniProt:
A0A9W4THN7
LinkDB
All DBs
Position
TRV642:1246664..1250029
Genome browser
AA seq
1121 aa
AA seq
DB search
MSKNALYTLYDNLPKNQQIATQLLEQKQIKMHLNGLLGSAVSFVIRAVFKKSELPFLVIL
DNKEEAAYYLNDLEQMIGEQDVLFYPASFRRPYQIEETDNANVLLRAEVLNRINSRKKPA
IIVTYPEALFEKVVTRRELDKNTLKVALNDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDHPYRIEFFGNEVDSIRSFDVETQLSVETHKKITIIPNVENKLFQENR
ESFLDYIAERTVLFVQNTDGLLTQLDKQFGRAEEAFEKLSKEIKRAEPEKLFLNQSSFIK
RALDFSIVELASKPVFKITKTFDFHIHPQPSFNKQFDLLLNNLSDNHFNGYKNYLFCSNE
TQAKRFHDIFETLDEANSENIRKQYNTVVLPLYQGFIDEESQITAYTDHQIFERYHKFNI
KNGYSKKQNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQTKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVTIGYMNRFRTAKQKAQTLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRI
ENIKEVAGMIQRLVPNARVGIGHGQMEGAKLEELMLGFMNGDFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEEN
DIETKEYVKDLQIDTDFELLFSDEYINNVTERLSLYNELGGVKNEQELVVFQNKLIDRFG
PMPPRANALMNSIRIKWIATSVGIEKLVMKKGKMIGYFVSDQQSDYYQSKRFHKVIKFVQ
THSNLCQMKEKQTPNGLRLLLTFDNVKSTKRALELMEMLGE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgccttatataccctgtatgataatctgccaaagaatcagcagattgcc
acgcaattattggagcagaagcaaataaaaatgcatcttaacggattgttagggtcagcg
gtttcatttgttatacgtgccgttttcaaaaaatcggaattgcctttcttggttatttta
gacaataaagaagaggcggcttattacctgaacgatctcgaacaaatgattggagaacag
gatgtattgttttatcccgcgtcgtttcgtcgtccatatcaaattgaggaaacagataat
gcgaatgttttgcttcgtgctgaggttttgaaccgaattaattcccgtaaaaaacccgct
ataattgttacctatccggaagcgctttttgaaaaagttgtaaccagaagagaactcgat
aaaaatacacttaaagtcgctttgaacgataaaatttcgatcgattttatcaacgaagtt
ttgtttgaatatgaatttaaaagagtcgattttattaccgaaccgggagagttttctgtt
cgtggaggaattgttgatgtattctcattctcaaacgatcatccctatcgaatagagttt
tttggtaatgaagtagacagtatcagaagttttgatgtcgaaacacagttatcggtagaa
acacataaaaaaatcacaataattccaaacgtagagaacaagctttttcaggagaacaga
gagagtttcctggattatattgcagagcgaacggtactgtttgttcaaaacacagatggg
cttctaacgcagttggacaaacaatttggcagagccgaagaagcttttgagaaactttca
aaagaaataaaacgcgctgaacctgaaaagttattcttaaatcaaagctcatttatcaag
cgggcgttagatttttcgatagtagaattggcttcgaaacctgtttttaaaatcacaaaa
acattcgattttcacattcaccctcagccttccttcaacaaacaatttgatttgctactg
aataatctgagtgataatcattttaacggatataaaaattatttgttctgttcgaatgaa
actcaggccaaacgttttcatgacatttttgaaacgttagatgaagctaattccgagaac
attagaaaacaatataataccgttgtcttgcctttgtatcagggttttattgacgaagaa
agtcaaattacggcctataccgatcatcagatttttgagcgttatcacaaatttaatatc
aaaaatggttattcaaagaagcagaacattacacttaaggaattaactgcgctttcggtt
ggtgattatgtaacacatatcgatcacggtattgggaaatttggcggtctgcagaaaatt
caggtcgaaggtaaaacgcaggaagccataaaactggtttatgcggataacgatattgtg
tatgtaagtattcattcgcttcataaaatttcaaaatacaacggaaaggacggaactcct
ccgaaaatctataaattaggatcgaacgcctggaaagttttaaaacaaaaaaccaaagcg
cgtgttaaacatattgctttcaatttgattcaattgtacgcgaaacgacgtttggaaaaa
gggtttcagtttgcaccggacagttatttacaaaacgaattagaaagttcatttatatac
gaagatacgccggaccaaaccaaatcgacgcaggaagttaaagccgatatggaaagcgat
cgcccaatggaccgcttggtctgtggtgacgtaggttttggaaaaactgaggtagcgatt
cgtgcggcatttaaagcggtagacaatagtaaacaggtagctgttttggtccctactact
attttggcttaccagcattaccgtaccttttcggaacgattgaaagatatgccggttact
attggttacatgaaccgatttagaacggccaagcagaaagcacaaacgttaaaagattta
gcagaagggaaactggatattgtgataggaactcatcagttagtcaataaaaatgtagtt
tttaaagatcttggtttattgattgtcgacgaggaacaaaagtttggagtgaacgtaaaa
gataaacttaaaactattgctgccaatgtcgataccttaaccttaacggcaacgccaatt
ccgagaacacttcagttttcattgatggcagccagggatttatcggttattacaacgcct
ccgccgaaccgatatcctattgaaaccaatgttgttgggtttaatgaagaaataattcgt
gatgcaatttcgtatgaaattcagcgtaacgggcaggttttctttattaataaccgaatc
gaaaatataaaagaagtggctggaatgattcagcgtctagtaccaaatgccagagtcgga
atcggtcacggacaaatggagggtgcgaaactcgaagaattgatgctgggtttcatgaat
ggcgatttcgatgttctggtagccacaacaattatcgaaagtggtttggatgtgcccaat
gccaacacgattttcattaacaatgccaataattttggactgtctgatctgcatcaaatg
cgcggtagggtaggtcgaagcaataaaaaagcattttgttattttatctgtccaccttat
tcatccatgaccgaagatgccagaaaacgtattcaggctttggagcaatttagcgaactc
ggaagtggttttaacattgcaatgaaagatcttgaaattcgtggcgcaggagatttatta
ggtggagaacaaagtggtttcattaatgagattggatttgatacgtatcaaaagatcatg
aatgaggcgatcgaagaattgaaagaaaatgaattcaaggatttatacccggaagagaat
gatattgaaacgaaagaatatgtaaaagatttacaaatcgatactgattttgagttgttg
ttttctgatgaatacatcaataatgttaccgaacgtttgagtttatataacgagttgggt
ggtgtgaaaaacgaacaggagcttgttgtgtttcaaaataaattaattgaccgttttggt
ccgatgccgcctcgtgccaatgctttgatgaatagtattcgcatcaaatggattgctaca
agtgtgggtattgagaaattagtgatgaaaaagggcaaaatgattggttatttcgtttcg
gaccagcaatctgattattaccagtccaagcgtttccataaagtgataaaatttgtacaa
acccatagtaatctttgtcaaatgaaagaaaaacaaacgcctaacggtctacgactttta
ttgacctttgataatgtaaaatcgaccaaacgagcgttggaattgatggagatgttggga
gaataa
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