Flavobacterium cerinum: NOX80_04260
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Entry
NOX80_04260 CDS
T09039
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcu
Flavobacterium cerinum
Pathway
fcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NOX80_04260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcu03400
]
NOX80_04260 (mfd)
Enzymes [BR:
fcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NOX80_04260 (mfd)
DNA repair and recombination proteins [BR:
fcu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NOX80_04260 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF2089
UB2H
Motif
Other DBs
NCBI-ProteinID:
UUC46420
LinkDB
All DBs
Position
complement(924488..927844)
Genome browser
AA seq
1118 aa
AA seq
DB search
MKTDIISLYEKSPKVNLLAEHLQKKEEKIHLKGLVGSSLSFVIQSLFHKSDLPFLLLFQD
KEEAAYYLNDLENLINDQDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPSII
VSYPDAIFEKVVTRKELDKNTLKVATGDNISIDFINEVLFEYNFKRVDFVSEPGEFSVRG
GIIDVFSFSNDNPYRIEFFGNEVDSIRTFDVETQLSIEKQKKITIIPNVENKFLKENRES
FLDYISPQTVIFVQNTDLLLSRLDKLFEKANEAFQKLSSEIQHVSPENMFLNQTSFVKRS
LDFTLVELASKAIYRTQKTVEFHTQPQPSFNKQFDLLLNNLNDNHFNGYKNYLFCSNEGQ
AKRFHDIFESLDETNHEDIRKQYKTIVAPLYQGFIDEENRIACYTDHQIFERYHKFNLKN
GYSKKQTITLKELTTLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYV
SIHSLHKISKYNGKDGAPPKIYKLGSSAWKTLKQKTKARVKHIAFNLIQLYAKRRLDKGY
AFSPDSYLQAELESSFIYEDTPDQLKATQDVKADMENDRPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAILVPTTILAFQHYKTFRDRLKDMPVNVNYINRFRTAKQKTEILKELES
GKLDIIIGTHQLVNKNVVFKDLGLLVIDEEQKFGVAVKDKLKTIAQNVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIEN
IKEVAGMIQRLVPGAKVGVGHGQMDGKKLEELMLAFMDGEFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSELGS
GFNIAMKDLEIRGAGDILGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENDI
ETKEYVKDIQIDTDFEILFPDEYINNISERLNLYNELSIIKTEDDLQKYEQKLIDRFGPL
PKQAVSLLNSIRIKWIATKMGIEKLVLKQGKMVGYFVADQQSDFYQSNRFHTVLRFVQQQ
GNLCKMKEKETKNGLRLLLTFENVKSIKRALELMEMMN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaccgatattatatccttatacgaaaaatcgcctaaagtgaaccttttggcggaa
cacctacagaagaaagaggaaaagatccacctgaaaggattggttggttcgtcactttca
tttgtaattcagtcactttttcataaaagtgatcttccttttttactgctttttcaggat
aaagaagaagcggcttattatctgaatgatcttgaaaacctaattaatgatcaagatgtt
ttgttttatcccggttcgtaccgacgtccgtaccagattgaagaaacagataatgcgaat
gttttacttcgggctgaagttttaaaccgaatcaactcccgcaaaaaaccatcgattatt
gtttcctatccggatgctattttcgaaaaagtagttactcgtaaggaactggataaaaac
acattaaaagtcgctaccggagacaatatttccatcgactttatcaacgaagttcttttt
gaatacaattttaaacgggttgatttcgtatcggaacccggagaattttccgtacgtggc
ggaatcattgatgttttttccttttctaatgacaatccttaccgaattgaatttttcggt
aatgaagtagatagtatccgtactttcgatgtagaaacacagctatcgatcgaaaaacag
aaaaaaatcacgatcatcccgaatgtcgaaaataaattcctaaaagaaaaccgtgaaagt
tttctggactatattagtcctcaaacggttatttttgtccaaaacacggatttattacta
agccgactggataaattatttgaaaaagcaaatgaagcctttcaaaaattatcctctgaa
attcagcatgtctctccggagaatatgtttctgaatcaaacgtcttttgtaaaaagatca
ctggactttacacttgtggaactggcctcaaaagcgatttacagaacacaaaaaacggtt
gaatttcatacacaaccacaaccgtcatttaacaaacagttcgatttattactcaacaat
ctgaatgacaatcattttaacggttacaaaaattatcttttctgttcgaatgaaggacag
gcaaaacgttttcacgatattttcgaatcactagacgaaaccaatcatgaagacatccga
aaacaatataaaactattgttgcaccattatatcagggatttatcgatgaagaaaaccga
atagcctgttataccgatcaccagatttttgaacgttaccataagtttaacctcaaaaac
ggttattcaaaaaaacaaaccattaccttaaaagaactaaccacattatcggtaggcgat
tatgtaactcatattgatcacggaatcggtaagtttggtggtttacagaaaattcaggtt
gaaggcaaaacacaagaagctattaaattggtttatgccgataatgacattgtatatgta
agcattcactccttacataaaatatccaaatacaacggaaaagacggtgcgccgccaaaa
atatacaaactgggatcgagcgcctggaaaacattaaaacaaaaaacgaaggctcgtgtt
aaacatattgcgtttaacctgattcaattatatgctaaacgccgattggataagggatat
gctttttcaccggacagttatttacaagccgaactggaaagctcttttatctatgaagac
acgccggatcagttaaaagcaactcaggatgttaaagcggatatggaaaacgaccgtcca
atggaccgtttggtttgtggtgatgttggttttggaaaaacggaggtcgcaatacgcgct
gcttttaaggccgtagacaacggaaaacaagtcgccattctggttccgactaccatttta
gcatttcagcactacaaaacattccgtgatcgattaaaagatatgccggttaacgtaaat
tatattaaccgtttccggacagccaaacaaaaaaccgaaatcctgaaagaactggaaagc
ggtaagttggacatcattatcggaacccatcagttagtgaataaaaatgtcgtttttaaa
gatttaggtttattggttatcgatgaagaacagaaattcggagtagccgtaaaggataaa
ttaaaaaccatcgcccaaaatgttgatacgttaacgttgacagcaactcctatcccgaga
accttacaattctcgttgatggcagcacgtgatttatcggttattacgacaccaccgcct
aatcgttacccaatcgaaacgaatgttgtcggttttaacgaagaagtaatccgggatgct
gtttcatatgaaattgaacgcggcggacaggtttattttattaataaccgcatcgaaaac
attaaagaagttgccggaatgattcagcgactggttccgggagccaaagtaggcgtagga
cacggtcagatggacggcaaaaaactcgaggaactgatgcttgcttttatggatggtgaa
ttcgatgtattagttgccactaccattatcgaaagcggattagacgttccgaatgcgaat
acgatttttatcaataacgctaataatttcggactttccgacttgcatcagatgcgcgga
cgtgtaggccgaagcaataaaaaagcattttgttactttatttgtccgccgtattctgct
atgacagaagaagcccgcaaacgaattcaggctctggaacaattcagcgaattgggaagt
ggttttaatattgccatgaaagatcttgagattcgcggtgccggtgatatattaggtggt
gaacaaagcggttttatcaatgaaatcggttttgacacctatcagaagatcatgaatgaa
gcgatcgaggagttaaaagaaaacgagttcaaggatctttatccggaagaaaacgatatt
gaaaccaaagaatatgtaaaagacattcagatcgatacagattttgaaattttattcccg
gacgaatatatcaataacatttcagaacgtctgaatctgtataatgaattgagcattatt
aaaacggaagacgatctacagaaatatgaacagaaactaatcgaccgtttcggaccatta
ccgaaacaggctgtttctttattaaacagtattcgtatcaagtggattgctaccaaaatg
ggtatcgaaaaactggttttaaagcaaggaaaaatggtaggttattttgttgccgaccaa
caatccgatttttaccagtccaatcgttttcacactgtattgcgttttgtacaacaacag
ggcaatctgtgtaaaatgaaagaaaaagaaaccaaaaacggactgcgtttactattgacc
ttcgagaatgtaaaatcgatcaaacgcgctttggaattgatggaaatgatgaattaa
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