Flavobacterium covae: AWN65_00255
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Entry
AWN65_00255 CDS
T08038
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcv
Flavobacterium covae
Pathway
fcv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWN65_00255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcv03400
]
AWN65_00255
Enzymes [BR:
fcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWN65_00255
DNA repair and recombination proteins [BR:
fcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWN65_00255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMA48000
LinkDB
All DBs
Position
complement(58421..61774)
Genome browser
AA seq
1117 aa
AA seq
DB search
MNTDYIKQSFFNHSKISQIAHLLNNDNKVHLKGLIGSSLSFVIEALFQKTDKSFLLLANE
KEEAAYLLNDLEHLIGEKEVLFYPSSYRRPYQIEETDNANVLLRSEVLNRINSRKKPCII
VSYPEAIFEKVVTKKELDKNTLKISINDKVSIDFINEVLFEYDFKRVDFITEPGEFSVRG
GILDVFSFSNDNPYRIEFFGNEVDSIRTFDVSTQLSIETKNKITIIPNFENKLLEEKRES
FLEYIHPKTSIFIQNADSLLNSLDKLFAKAEESFEKLSKDLKHATPNDLFVNQETFIKQA
LNFSIVEISAKPTFKIQNTFEFYTKPQPSFNKQFDLLMENLKNNRQNELKNFLFCANEQQ
AKRFHDIFESMDEEQHEHFAKDYETIVLPLYQGFIDEENQIACYTDHQIFERYHKFSIKN
GYAKKQNITLKELNSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLIYADNDIVYV
SIHSLHKISKYNGKDGTPPKIYKLGSNAWKTLKQKTKARVKHIAFNLIQLYAKRRLDKGY
AFAPDSYLQHELESSFIYEDTPDQLKATQDVKADMENERPMDRLVCGDVGFGKTEVAIRA
AFKAVDNSKQVAVLVPTTILAYQHFRTFKSRLKDLPVNVSYLNRFRTTKQKSEILKDLES
GKLDIIIGTHQLVNKNIKFKDLGLLIIDEEQKFGVNVKDKLKTIANNVDTLTLTATPIPR
TLQFSLMAARDLSVISTPPPNRYPIDTQIIGFNEEVIRDAISYEIERGGQVYFINNRLEN
IKEIAGMIQRLVPNAKVGIGHGQMEGKQLEEIMLSFMEGEFDVLVATTIIESGLDVPNAN
TIFVNNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEEARKRIQALTQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKIMQESIEELKENEFKDLYPEESNI
ETKEYVKDLQIDTDFELLFSDEYINSVTERLNLYNELAIIKTEEKLQEYQKQLEDRFGKL
PKSGLALLDSLRLKWKATHLGIEKIVLKQGKLVCYFVGDQQSDYYQSSRFHKVLQFIQQN
ANLCKMKEKETKNGLRLLLTFENVKSIKKALELIQMI
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgaataccgattatatcaagcagtcattttttaatcattctaagatcagtcaaatagct
catttattaaacaatgataacaaagttcatcttaaaggtttaataggctcttctttgtca
tttgtcatagaagccttatttcaaaaaacagacaaatcttttttattattagccaatgaa
aaagaagaggccgcttatttattaaacgatttagaacacttaataggagaaaaagaggtt
ctcttttatcctagctcttacagaagaccttatcaaatagaagaaaccgataacgcaaat
gtcttacttcgttcagaagtactaaataggattaattctagaaagaaaccttgtattatt
gtttcctatcctgaagccatttttgaaaaagtagtcactaaaaaagaattagataaaaac
actttaaaaatttcaattaatgataaagtttcaattgattttatcaatgaagtactattt
gaatacgattttaagcgtgttgattttattacagaacctggtgaattttcagtacgtgga
ggtattttagatgttttttctttctcaaacgacaatccttatagaatcgaattttttggc
aatgaggtagatagcataagaacctttgatgtaagtactcaattatctattgaaactaag
aataaaattacgattattcctaattttgaaaataaattattagaagaaaaacgtgaaagt
tttttagaatacattcatcctaaaacctccatttttattcaaaatgcagattccttacta
aatagtttagataagctttttgcaaaagcagaagaaagttttgaaaaattatcgaaagat
cttaaacatgctacccctaatgatttattcgtaaaccaagaaacatttatcaaacaagca
ttaaatttttcaatagtagaaatatctgctaaacctacttttaagattcaaaacactttt
gaattttatacaaaaccacaaccttcctttaataaacaatttgatttattaatggaaaat
ttaaaaaataatcgtcagaatgagctaaaaaactttttgttttgtgctaatgaacaacaa
gctaaacgtttccatgatatttttgagtcaatggatgaagaacagcacgaacattttgct
aaagattatgaaactattgttttacctctataccaaggctttatagacgaagaaaatcaa
atagcttgttatactgatcatcaaatttttgaacgttatcataaattttccattaaaaat
ggatatgctaaaaagcaaaatatcacactaaaagagctaaattctttgagtgtaggtgat
tatgtaacacatatagatcatggaattggaaaatttggtggtctacaaaaaattcaagtt
gaaggcaaaacgcaagaagctattaagctaatttatgctgataatgatattgtatatgta
agcattcattcattacacaaaatatcaaaatacaatggaaaggatggcacacctcctaag
atctataaattaggttcaaatgcttggaaaaccttaaaacaaaaaacaaaagctcgtgtt
aaacatattgcatttaacttaattcagctttatgccaaacgtcgtttagataaaggatat
gcttttgcacctgatagttatttacaacacgaactagaaagttcttttatttatgaagat
acacccgaccaactaaaagcaactcaagatgtaaaagcggatatggaaaacgaacgtcct
atggatcgtttagtttgtggcgatgtgggatttgggaaaacagaagttgccattcgtgcc
gcttttaaagccgtagataatagtaaacaagttgctgttttagttcccacaactattctt
gcctaccaacattttagaacatttaaatcacgattaaaagacttacctgtaaacgtcagt
tacttaaaccgttttagaacaaccaaacaaaaatctgaaattctaaaagatcttgaatct
ggtaaattagatattattataggtactcatcaattggtcaacaaaaatattaaatttaaa
gatttaggattactaattattgatgaggaacaaaaatttggggtaaacgtaaaagacaaa
ttaaagacgattgctaataatgtggacacattaacactgacggcaacacctatccctaga
acgttacaattttctttaatggctgcaagagatctatctgtaattagcactccccctcct
aatcgttatcctattgatacacaaataataggatttaatgaagaagtaattcgtgatgct
atttcatacgaaattgaaagaggaggtcaagtctatttcataaataatcgtttggaaaat
atcaaggaaattgctggaatgattcaacgtttagtacccaatgcaaaagttggtattggt
catggacagatggaaggaaaacaattagaagaaattatgctttcatttatggaaggcgaa
tttgatgttttggttgctactactataattgaaagcggtttagatgtaccaaatgccaat
actatttttgtaaacaatgccaataattttggattatcggatttacatcaaatgcgtggt
cgtgtgggaagaagtaataaaaaggctttctgttattttataactcctccttattccgta
atgaccgaagaggcgcgtaaacgtattcaagcattgacacaatttagtgaattaggcagc
ggttttaatattgcaatgaaagacttagaaattcgaggtgctggtgatttattaggtggt
gaacaaagcggtttcattaatgaaattggttttgaaacctatcaaaaaattatgcaagaa
tctattgaagaattaaaagaaaacgaatttaaagatttatatccagaagaaagtaatatt
gaaacaaaggaatatgtaaaagaccttcaaattgatactgattttgaactgcttttttca
gatgaatacataaacagtgtaactgaacgtttgaatttgtataatgaattagcgatcatt
aaaaccgaagaaaaactacaagaataccaaaaacaattggaagatcgtttcgggaaatta
cctaaatctggtttagccttattagatagcttgcgtttaaaatggaaagcaactcattta
ggaattgaaaaaatagtattaaaacaaggtaaactggtttgttattttgtaggagatcaa
caaagtgattactatcaatcttcccgttttcacaaagtcttacaatttatacaacaaaat
gcaaatctttgcaaaatgaaggaaaaagaaactaaaaacgggcttcgtttattgttaact
ttcgaaaatgtaaaatctatcaaaaaagcattagagttaattcaaatgatttag
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