KEGG   Fragilariopsis cylindrus: FRACYDRAFT_182101
Entry
FRACYDRAFT_182101 CDS       T04784                                 
Name
(GenBank) Tfb2-domain-containing protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03022  Basal transcription factors
fcy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FRACYDRAFT_182101
  09124 Replication and repair
   03420 Nucleotide excision repair
    FRACYDRAFT_182101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fcy03021]
    FRACYDRAFT_182101
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_182101
Transcription machinery [BR:fcy03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     FRACYDRAFT_182101
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     FRACYDRAFT_182101
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-ProteinID: OEU19311
JGI: 182101
UniProt: A0A1E7FMC1
LinkDB
Position
Unknown
AA seq 368 aa
MTPEDLERYTQSQWDAVLHYLVGTPNMKVQPNPAVTHFLFQTDLMQPDPDYTRSSYNNKD
DAPLVITQKGYDFMLQDNTQQVWHFIVQYLDSMEASEKKDKFQREALLVLICLSHSRFGE
CYSTALLTKRGLKIVKDLALFGLIYHKEIGGTSIFYPTRIAMQLVGAGGSGMWSWSTKAL
DEALAHPRPHNSSHLAIIVQTNFQLCAYTTSELHVSMLGLFCDVHSIRRLPNVIFMTITR
DSIKGAFSLGIQSQQILRFLEKHAHPKLRQGSGGLGASVSASPLPGNIVDQICLWDRERS
RVLWNDVFMHQPMLTGEYRAVHKYVLDHGYHVWSSERRNQIYIKYDHVERVQRFISKWRA
KAASARGR
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgacaccagaagatttagaacggtatacacaatctcaatgggatgcggtcttgcattat
ttagtgggtacaccgaatatgaaagtacaaccgaatccggcggtgacacattttttattt
caaacggacttgatgcaacccgatccagactatacacgtagtagctataataataaggat
gacgctccacttgttattacacaaaagggatatgattttatgttacaagataatactcaa
caggtgtggcattttattgtgcaatacttagattcgatggaggcatcggaaaagaaggat
aaattccaacgagaagcgttattggtcttgatttgtttaagccattcacgatttggagaa
tgttattcgacggcattattaacgaaacgtggactaaaaatcgtcaaagatctcgcatta
tttggtctaatttatcacaaagagattggtggaacatcgatattttatccgacccgtatt
gcaatgcaactggtcggggctgggggtagtgggatgtggagttggtcgacgaaggcactc
gatgaggcattagcacatccccgaccacacaattcaagtcatttagcaatcatcgtacaa
actaattttcaattatgtgcctatacaacatccgaattacatgtgagtatgttaggatta
ttttgtgacgtacattcgattcgacgattgccaaacgttatctttatgactattacacga
gatagtatcaagggcgcctttagtcttggtatccaatctcaacaaatattacgattttta
gaaaaacacgcacatcctaaattacgacagggtagtggtggacttggtgcctccgtttct
gcatcaccacttcctgggaacattgtcgatcaaatctgtttatgggatcgggaacggtcg
cgcgttttatggaatgatgtttttatgcatcagcctatgctgactggtgaatacagagca
gtacataaatatgtattggatcatggttatcacgtatggagtagtgaacgtcggaatcag
atttatattaaatatgatcatgtggaacgtgtgcaaagatttatatcaaaatggagagca
aaagctgcttcagcacgaggaagataa

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