Fragilariopsis cylindrus: FRACYDRAFT_182101
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Entry
FRACYDRAFT_182101 CDS
T04784
Name
(GenBank) Tfb2-domain-containing protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03022
Basal transcription factors
fcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FRACYDRAFT_182101
09124 Replication and repair
03420 Nucleotide excision repair
FRACYDRAFT_182101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcy03021
]
FRACYDRAFT_182101
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_182101
Transcription machinery [BR:
fcy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FRACYDRAFT_182101
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FRACYDRAFT_182101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-ProteinID:
OEU19311
JGI:
182101
UniProt:
A0A1E7FMC1
LinkDB
All DBs
Position
Unknown
AA seq
368 aa
AA seq
DB search
MTPEDLERYTQSQWDAVLHYLVGTPNMKVQPNPAVTHFLFQTDLMQPDPDYTRSSYNNKD
DAPLVITQKGYDFMLQDNTQQVWHFIVQYLDSMEASEKKDKFQREALLVLICLSHSRFGE
CYSTALLTKRGLKIVKDLALFGLIYHKEIGGTSIFYPTRIAMQLVGAGGSGMWSWSTKAL
DEALAHPRPHNSSHLAIIVQTNFQLCAYTTSELHVSMLGLFCDVHSIRRLPNVIFMTITR
DSIKGAFSLGIQSQQILRFLEKHAHPKLRQGSGGLGASVSASPLPGNIVDQICLWDRERS
RVLWNDVFMHQPMLTGEYRAVHKYVLDHGYHVWSSERRNQIYIKYDHVERVQRFISKWRA
KAASARGR
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgacaccagaagatttagaacggtatacacaatctcaatgggatgcggtcttgcattat
ttagtgggtacaccgaatatgaaagtacaaccgaatccggcggtgacacattttttattt
caaacggacttgatgcaacccgatccagactatacacgtagtagctataataataaggat
gacgctccacttgttattacacaaaagggatatgattttatgttacaagataatactcaa
caggtgtggcattttattgtgcaatacttagattcgatggaggcatcggaaaagaaggat
aaattccaacgagaagcgttattggtcttgatttgtttaagccattcacgatttggagaa
tgttattcgacggcattattaacgaaacgtggactaaaaatcgtcaaagatctcgcatta
tttggtctaatttatcacaaagagattggtggaacatcgatattttatccgacccgtatt
gcaatgcaactggtcggggctgggggtagtgggatgtggagttggtcgacgaaggcactc
gatgaggcattagcacatccccgaccacacaattcaagtcatttagcaatcatcgtacaa
actaattttcaattatgtgcctatacaacatccgaattacatgtgagtatgttaggatta
ttttgtgacgtacattcgattcgacgattgccaaacgttatctttatgactattacacga
gatagtatcaagggcgcctttagtcttggtatccaatctcaacaaatattacgattttta
gaaaaacacgcacatcctaaattacgacagggtagtggtggacttggtgcctccgtttct
gcatcaccacttcctgggaacattgtcgatcaaatctgtttatgggatcgggaacggtcg
cgcgttttatggaatgatgtttttatgcatcagcctatgctgactggtgaatacagagca
gtacataaatatgtattggatcatggttatcacgtatggagtagtgaacgtcggaatcag
atttatattaaatatgatcatgtggaacgtgtgcaaagatttatatcaaaatggagagca
aaagctgcttcagcacgaggaagataa
DBGET
integrated database retrieval system