Fragilariopsis cylindrus: FRACYDRAFT_260853
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Entry
FRACYDRAFT_260853 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K13138
integrator complex subunit 1
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_260853
Spliceosome [BR:
fcy03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
FRACYDRAFT_260853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3677
RsbRD_N
Motif
Other DBs
NCBI-ProteinID:
OEU17400
JGI:
260853
UniProt:
A0A1E7FGV0
LinkDB
All DBs
Position
Unknown
AA seq
2203 aa
AA seq
DB search
MSTWKSKRGAEKRPPDLDDCIENIESLSDDKFKSTKNVGQLYVAAIGLVYHLRLDQETFF
SIRRKRVKRDDEVHFPKPKEIPAMTAVLHNQSLFESLIWCLKSNSTDVFDSSSSSSSSAA
SVSQMNSLYTPGSRKRGLSLDKTEVVSNKTMKLAHGQSPLVGKQKKSFNYANKPQMNIKV
LAATILYVTMEPLDHWPVPLIEAYAEDCFGPRSWVDDPACRLLVQNLTLIHSDDNNHVHE
VKNDENHKQQLEADACKVAEFYRMEKEKRNNNKQSQHTKTLSSSSASTPRTSPTFSRVSI
QNDNSLNGSDKIPIAPILTKNRSMSVESSESKNTRQLSNSKSKKSKSYMESSHAETTARS
LTLNNKAEDESDSGDEEEEEVAIATSFGRPSGVGNGDGSSDGNSSSSGEEEDVCFLDKKS
FDEHQIPSNAAHNPLEESFTSSADIPPPGPKLTYPLQQQKLNFTEVRQRYFGHNLESSHQ
AISEKLSERLDIKSKHNSGLLQCLPSFTSIPSVRSIITANLEKWLQSPALSGLARTLFSI
TVNSMKNINPPLPADLDALDNILRMRLKANQLNAHVENITAVATKIPTVAVTKHIYGHIL
REILLSMDSRDSAFSDHLSMIHAVHDVLPGQLSASGIASSILDLLTNPPISFGDLSKSQL
VRRIRKLIQAIATKFGSSFDAYKVLDAMLSYQVDQEYLWTIRDEENKARLMFQCVTLLVD
LTVVMQRVQPGGKSVKIINPSENDIAIVRAKLIKARKLLLRWCCEDYAPLCPTSSSNKYQ
RSTPTNGSREKKKGDIVGAGPADYTSILDGLTEKDFPDWVNVIRCMLFLENPDSPELRQF
LAMNDTSVEDDPGWDDEAKRISFCCDFGADIDDAMMWVILDTTTKKENSSPNDIALLVLE
HMFEGCKKDKKPSLLLQDAKLLYKLYELVEYIPSVRKKEVMSNDSNGDYCDKICAEKTYE
ESLSTFSIPRLGYPGMWWRVTGLALIMCGASPDTIGSVALEKFPTLKALIKMITSDRYRF
PTVDADEAAREEQKKTEQMMRDEEAKITEILFAPTQKPKKKTKHKIDAGTEYERSRTSRR
QQEKREQELKRQREKEVAEARVEASRRKKLLRTAQKSIMIWDPTKGPRKPPKESADLIFS
LEELFDLPRVFRQKSTEPDFLLATIGSTTRGAIERAYDWLIPIISFFPETISRLPASASC
FLLLRAYGTEGEERSQLQKLSAPLLEHVRDSLMGKFGEADAVRAFDLLLTDVASHNPDRR
RCARRVLHNAIGKENVKDMDETFAGSNHAWAINLMHVEHTKSILEDAVKKLALAASFERG
SNLRYLILALNKLTKLAKENSMPGDWDFASLLIELVSIRPTVFAAALSSFPDLCSLAIHI
VIEEFKVYFEGESVKIKTGDIMVCISLCSSPFKNGGRVPTKVEMPITLLQSSCVLLSIWF
DDDKNEMDSAAIDGLVKMLMKSREFEQGDNSEPKGIDDVDGLAGAKLVNTQKSAIPVESW
VMLAKSRSDFIAKRAALTAPTSFLPRLLLCSGLPRASLLTMVDRLGRLGEKAADTNKAFN
QLLAPSALSEWDIGRLGHRRDISRKLFGRLSAYSRMYNLLDLNAPDQVSFTFVEWLSDSC
QNAQKSTKMKAKKAKVAPAAIFASVESARALFNSLPMDMLHDNDVSTVTQVDADASDMTD
FLAFQDKEIISPPERLDDANTIEKFITRIFEENKPDILDKWLDINFSQQPIPMRRKRRYK
KEDPPKLSNDELCFLLLQRYILLERKVEGLASALVKWIPKLSASHGSPKFWKTLFTDGQK
PSFLWNNLLSRCFQTWNHTHMARCRIWILSEGSKEKLDLLKVVRFLIEASTFSTIHVENF
VDLPLAVEDSAWGRTEDTVRSATGFALDCLVAYDYENRLRSRSDPPECLVLLLLIARLGR
NQVQFISGAIMKRIQSENEQAKCWLLLCLLRIYAYFPFSMNLGTSALRSNLKEAVEISAD
DWLFWRSPLDDSVQDMLDTALSNISSVRSVQTLVDISKKHPLLLLRKLDKMGNVLEKDAV
AIDSCVKVGVISGESLKGPLRAVINGKMTKLSVKHWGFSYTEHVWSTILDVVAAVPNEVL
FGCALKMGLLDLLGIYLRLVLVQSQLRTSSDRLGKLKEKLSEFLGVFKSTNPVAYDSWMA
SANCDLPSLGATRNVLVGCGFMSHKQAIESVRKAYSSETKGEN
NT seq
6612 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacctggaaaagcaagagaggcgccgaaaagcggccaccagatcttgatgattgc
atagaaaatattgaatctctgtccgacgataaattcaagtctacgaagaatgttgggcag
ctgtatgttgctgcaattggtctcgtctatcatcttcgacttgatcaggaaacatttttt
tcaattcgacgaaaacgagtgaagagggacgatgaagttcattttccgaaacctaaggag
attcctgccatgacagcagttttgcataatcagtctttattcgaatctttgatctggtgt
ttgaaatctaattccactgatgtattcgattcgtcgtcgtcgtcgtcgtcgtcagcagca
tcggtatcgcaaatgaattcattgtatactcctggatcacgaaaacgtggcctttctttg
gataagacggaagtggtatcgaataagaccatgaaattagcacatggacaatcgccactt
gttggaaaacaaaaaaaaagctttaactacgctaataaacctcaaatgaatatcaaagta
ctggcagcaacaatcttgtatgttacaatggagccacttgatcattggccagttcccctg
atagaagcatatgccgaagactgcttcggaccacgatcatgggtagacgatcctgcgtgt
cggctactggttcaaaatttgactctgatacatagtgacgacaataatcatgttcatgaa
gtaaaaaatgacgaaaatcataaacaacaactcgaggctgatgcctgtaaggtggcagaa
ttctatcgaatggaaaaggagaaacggaacaataataaacaatcccagcatacgaaaacg
ctgtcgtcgtcatcagcaagtactcctagaacatctccaacattttcacgagttagcatc
caaaatgacaattcgctgaatggtagtgataagattcccattgcacctatcctgacaaaa
aatcgttctatgtccgtagagtcatccgaatcgaagaatacacgacaactttccaactca
aaaagtaaaaaatccaaaagttatatggagtcatcgcatgcggagacaacagcaaggtca
ctcactctcaataataaggctgaagacgaatccgattctggagatgaagaagaagaagaa
gtcgccatagcaacatcatttggtagaccctctggtgttggtaacggtgacggtagcagt
gatggaaactcgtcatcttccggggaagaagaagatgtatgttttctagataaaaaatcg
ttcgatgaacaccagataccatctaacgctgcgcataacccactagaagagtcttttact
tcttcggctgatattcctccacctggtcctaagcttacatatcctcttcagcaacaaaag
cttaattttactgaggtgagacagcgatactttgggcacaacttagagtcttcgcatcaa
gctatttctgaaaagttgagtgaacgtttggacatcaaatctaagcacaattcgggcctt
ttgcagtgtctaccttcgtttacctcgattccatctgtgcggagcataattactgctaat
cttgaaaaatggctacaatcacctgctttgtctggcctggcaagaacattattttccatt
actgtgaacagcatgaagaatattaatccaccgctacctgcagatcttgacgcactagat
aacatccttcgtatgagactaaaggctaatcagctgaatgctcatgtcgaaaacatcaca
gccgttgcaaccaagattccgacggtagctgttaccaaacatatttatggccatatactg
cgggagattctactgagtatggattcgcgcgattcagcattttcagatcatttgtccatg
attcatgccgttcatgatgtactaccaggtcagctatctgcaagtgggattgcttcgtct
atattagacttactcacaaatccgcctatctcgtttggcgatctctcaaaatcgcaactc
gtccggagaataagaaagttgattcaagctattgctactaagttcggatcttcctttgat
gcgtataaagttctggatgctatgctatcataccaagtcgatcaagagtatttgtggaca
ataagggacgaagaaaataaggcccgtcttatgtttcaatgcgtgacgctacttgtcgac
ctcacagtagtgatgcaacgagttcaacctggtggaaaatcagtcaaaattatcaacccg
tcagaaaatgatatagctatcgtcagggccaagttgataaaagctcgaaagctcttactt
cgctggtgttgtgaagactatgcacctctctgtccaacatcatcatcgaacaaatatcag
aggagcactccaaccaatggatcaagagaaaagaagaagggagatattgtaggtgcggga
ccggctgattatacctctatactagacgggcttaccgaaaaagacttcccagattgggtt
aacgtcattcgttgtatgcttttccttgagaacccagattcgccggaattgcgccaattt
cttgcaatgaatgatacttcggtagaagatgacccaggatgggacgacgaagccaaacga
atttcattctgctgcgactttggtgcagatattgatgatgcaatgatgtgggtcattcta
gataccactaccaagaaagaaaatagctcaccaaacgatatcgcacttttggtgctagaa
catatgtttgaaggttgcaagaaagataagaaaccatcactgctgctccaggatgcaaag
ctattatataaactctatgaattagtcgagtacattccgtccgttagaaagaaagaagta
atgagcaacgattctaatggcgattattgcgataagatatgtgccgaaaagacttatgag
gaaagcttatctactttctctattcctcgccttgggtacccaggaatgtggtggcgagtc
actgggcttgctttgattatgtgcggtgcctcccctgatacgatcggatcagtagcattg
gaaaagttcccaacattaaaagccttgatcaaaatgattacgtctgatcggtatagattt
ccgaccgttgatgctgatgaagcggctcgtgaagaacagaaaaagaccgagcaaatgatg
agggatgaagaagcaaaaattacggaaatactatttgctcccacccaaaaaccaaaaaag
aagactaagcataagattgatgccggaactgagtacgagagatcgagaacttcaaggaga
cagcaggaaaaacgcgagcaggaactaaagaggcaacgcgagaaagaagtagctgaagct
cgcgtcgaagctagtcgcaggaagaagctgttacggactgctcaaaagtcgattatgatc
tgggaccctacgaaaggaccgaggaaacctccgaaggagtcagctgacctgatattttct
ctagaggagctcttcgaccttccacgagtgtttaggcagaagagcaccgagccagatttt
ctacttgcaacaattggctctactacacgtggagctatcgaacgtgcttacgactggtta
ataccaattatttctttctttccagaaacaatttctcgtctcccagcaagtgcatcctgc
tttcttttgttgcgtgcttatggcacggagggagaagaacgatcacagctccaaaagctt
tctgcaccccttttagagcatgtgcgtgattctcttatgggaaaattcggggaggccgat
gctgtcagggcgtttgatctactattaacagatgttgctagtcacaacccagaccggcgt
cgctgcgccaggcgtgtcctgcataatgccattgggaaggagaacgtcaaagacatggac
gagactttcgctgggtcgaaccatgcctgggcaatcaatctaatgcacgtggaacacaca
aagtcgatcttagaagacgcggtcaaaaaattagcgctcgcagcttcatttgaacgtggt
agcaacttacgatacctaattcttgctttaaacaaacttacgaagttagccaaggaaaat
agtatgcccggagattgggattttgcttctcttttgatagagcttgtctcaatacgtccg
acggtttttgctgccgcactgagctcatttccagatctttgttcgcttgcgattcatatc
gtcattgaagaatttaaagtttatttcgagggggaaagcgtgaaaataaaaactggagat
attatggtttgtatatctctatgcagtagcccttttaaaaatggtggaagagtaccaact
aaagtagagatgccaattactctgttgcaatcttcgtgtgttctattgagtatttggttt
gatgatgataagaacgagatggatagcgctgcgatcgacggcctcgtgaaaatgctcatg
aagtctcgcgaattcgaacaaggcgataatagtgaaccgaaagggatagacgacgttgac
gggcttgctggtgccaagttggtcaatacacaaaaaagtgccatccctgttgaatcgtgg
gtaatgcttgcaaaatctcggagtgatttcattgcaaaacgggcggcactgacggcaccg
acaagcttccttccaagattactactttgctctggactacctcgagcatctcttctgact
atggttgatagacttggtagacttggtgagaaagcagctgacacgaataaggcgtttaac
caattattagccccctctgctttgagtgagtgggatattggacgtctaggccaccgtaga
gatatatcaaggaagctttttggtagactctctgcgtactcaaggatgtacaatttacta
gacctcaatgctcccgatcaagtctcatttacatttgtagagtggctttcagactcgtgt
caaaatgctcagaaatcgacaaaaatgaaagcgaagaaggcgaaggttgcaccagcagca
atctttgcaagtgttgaaagcgctagggctttattcaactccttgcctatggatatgttg
catgataatgatgtatcgactgtaacccaggtggacgccgatgcatctgatatgactgat
tttcttgccttccaggataaagaaattatatctccccccgaaaggctcgatgatgccaat
acgattgaaaaatttataactcgtatttttgaagaaaataaacccgatatactcgacaag
tggttagatataaacttttcccaacaaccgattccaatgaggagaaaacggcgatacaaa
aaagaggatccaccaaagctcagcaatgatgagctctgttttcttctattgcaacgctat
attctgctagaacgtaaggtcgaagggcttgcctctgcgctcgtcaagtggattccaaag
ctttctgcttcgcacggatcaccaaaattctggaaaactttgtttactgatggtcaaaag
ccttcctttttatggaacaacctattatctagatgctttcaaacttggaatcacacccat
atggcgcgatgtcgaatatggattttatcagaaggtagcaaagagaaactcgacctattg
aaggtggttagatttctgatcgaagcttctacgttctccacaatacacgtagaaaacttt
gtcgacttaccgctagctgtcgaagattcggcctggggacgaactgaagacactgtgcga
agtgccactggctttgcactcgattgtttggtggcttatgattacgaaaatagactgcgc
tcccgcagcgaccccccagaatgtcttgttttgctccttctgattgcgaggttgggtcgt
aatcaggttcaattcataagcggggcaataatgaaacggatacagagtgaaaacgagcaa
gccaagtgctggctgcttctttgtcttctccgcatctatgcctattttcctttctcgatg
aacttgggaacatcagctctacgatcgaatcttaaagaagcagtggaaataagtgcggat
gactggctattttggagatcccccctggacgattctgtgcaagatatgcttgatacagct
ctctctaacatttcttcggtacggtcggtacaaactttggtcgacatatcaaagaagcat
ccactcctgttgctccgaaaactggataaaatgggcaatgtgttagagaaagatgccgtc
gctattgacagctgcgttaaagtaggggttatcagtggtgaaagtttgaagggaccgctt
cgggctgttatcaatgggaaaatgacgaaattaagtgtgaaacactggggattcagttac
acggaacatgtttggtcgaccatcctagatgtggttgctgcagttccaaacgaagtactt
tttggatgtgctctcaagatgggactgttagatttgttaggcatatacttacgactcgta
ttggtacaatcacagcttcgtaccagcagtgatcgactggggaaactaaaggaaaagctt
tctgaatttctgggagtatttaaatcaacaaatccggtagcctatgattcttggatggcg
agcgctaactgcgatctaccatcgttgggtgcaacaagaaatgtgttagttggatgtggt
ttcatgtcgcacaagcaggctatagaaagtgtcaggaaggcatattcttcggaaacaaaa
ggtgaaaactaa
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