Fictibacillus enclensis: QNH15_09630
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Entry
QNH15_09630 CDS
T09077
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fec
Fictibacillus enclensis
Pathway
fec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QNH15_09630 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fec03400
]
QNH15_09630 (ligD)
Enzymes [BR:
fec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QNH15_09630 (ligD)
DNA repair and recombination proteins [BR:
fec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QNH15_09630 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF4780
Motif
Other DBs
NCBI-ProteinID:
WHY74140
LinkDB
All DBs
Position
complement(1802084..1802998)
Genome browser
AA seq
304 aa
AA seq
DB search
MGKNIQQEVMINGIKVGITSPDKPLWPNLDILKLHYLEYLAKMAPFLLPFLQNRALTVIR
YPHGAGDERFYQKNCPDYAPDFVETVFEDGIHYIVCNNLQTLLWLGNQLAFELHIPFRKN
GTAYPSEIVMDLDPPSRDDFILSVEAALLIQEVCERLKLKTFIKTSGNKGLQVYIPLPEA
RFTFDDTRKFTHFLAQYLITKEPQWFTIERLKKNRGNKCYIDFIQHAEGKTIIAPYSVRG
NEEALVATPIHWQELTRDLRPEAFPLPIIHRRVMENGDPFEEFEKAKTSQPFGPVLDWLN
EQGL
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaatattcagcaggaagtaatgatcaatggcattaaggtgggcatcacgtct
cctgataaaccactgtggccaaacctcgacattttgaagctccactatcttgaatatttg
gctaaaatggctccatttctccttccctttttgcaaaaccgcgcattgacagttattcgt
tacccccacggtgcgggagatgaacggttttatcaaaaaaactgcccggattatgccccc
gattttgtggagactgtattcgaggacggaattcactatatcgtctgtaacaaccttcaa
accctgctgtggctcggcaatcagcttgcctttgagctgcatattcctttccggaaaaac
ggaactgcctatccctcagaaattgttatggatttggatccgccttcaagagatgatttt
attttatccgtggaagcagccctgttgatccaggaagtgtgtgagaggctgaaattgaaa
acattcatcaaaacaagcggcaacaaaggactgcaggtttatatccccttgcccgaggct
cgattcacattcgatgacacaagaaagttcacccactttcttgctcaatatttaattacg
aaggaaccccagtggtttaccattgaacggcttaaaaaaaacagaggaaacaaatgctac
atcgattttatccagcatgccgaaggaaaaacaatcattgctccctactcggtgagaggc
aacgaagaggcattggtggcaacccctatccactggcaagaactcactcgtgatcttcgg
ccagaagccttccccttgcccatcatccatcggcgggtcatggaaaacggagatccgttt
gaagaatttgaaaaagcaaaaaccagccagccgtttggtcctgttttggattggctgaac
gaacagggcttataa
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